Variant report

Variant	rs10305700
Chromosome Location	chr1:150807249-150807250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150802438..150804523-chr1:150806061..150808496,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10305656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10305712	1.00[EUR][1000 genomes]
rs16841797	1.00[TSI][hapmap]
rs7550809	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv872420	chr1:150786038-150847647	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1010875	chr1:150796816-150845827	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
8	esv1793983	chr1:150804748-150825924	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150782200-150809600	Strong transcription	Fetal Muscle Leg	muscle
2	chr1:150782200-150809800	Strong transcription	Stomach Smooth Muscle	stomach
3	chr1:150782200-150813000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:150782400-150812200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr1:150783200-150809800	Strong transcription	Fetal Thymus	thymus
6	chr1:150783200-150816600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr1:150783200-150816800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:150785800-150812400	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr1:150786000-150808600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:150788400-150808000	Strong transcription	Rectal Mucosa Donor 31	rectum
11	chr1:150788400-150809800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr1:150788400-150812200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr1:150790800-150811400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:150791800-150809000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:150792200-150814800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:150792600-150815400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:150792800-150812400	Strong transcription	Primary B cells from peripheral blood	blood
18	chr1:150793000-150816400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:150793200-150823200	Strong transcription	Placenta	Placenta
20	chr1:150793600-150815800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:150793800-150813800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr1:150794000-150809600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:150794000-150813600	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr1:150794200-150807800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:150794600-150812800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:150795600-150808200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr1:150797000-150814400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:150797400-150809200	Strong transcription	Brain Inferior Temporal Lobe	brain
29	chr1:150797400-150809600	Strong transcription	Left Ventricle	heart
30	chr1:150797400-150810200	Strong transcription	NHLF	lung
31	chr1:150797400-150812400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:150797400-150813000	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr1:150797400-150813400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:150797600-150809200	Strong transcription	Dnd41	blood
35	chr1:150797600-150809400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr1:150797600-150810200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr1:150797600-150810400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:150797600-150810800	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr1:150797600-150812400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr1:150797600-150812400	Strong transcription	Duodenum Mucosa	Duodenum
41	chr1:150797600-150812400	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:150797600-150812600	Strong transcription	Adipose Nuclei	Adipose
43	chr1:150797600-150813400	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr1:150797600-150815600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:150797800-150809400	Strong transcription	NHDF-Ad	bronchial
46	chr1:150797800-150811800	Strong transcription	Primary T cells from cord blood	blood
47	chr1:150797800-150812600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr1:150797800-150812600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr1:150797800-150812600	Strong transcription	Fetal Brain Female	brain
50	chr1:150798000-150809400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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