Variant report

Variant	rs10305928
Chromosome Location	chr4:148462842-148462843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148452107..148454132-chr4:148461133..148464097,2	K562	blood:
2	chr4:148462595..148465278-chr4:148466302..148468133,2	MCF-7	breast:
3	chr4:148461841..148464098-chr4:148471088..148472846,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151617	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56742716	1.00[AMR][1000 genomes]
rs60883134	1.00[AMR][1000 genomes]
rs72943768	1.00[AMR][1000 genomes]
rs72943788	1.00[AMR][1000 genomes]
rs72945825	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830109	chr4:148295061-148468605	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148432200-148472600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:148440400-148463400	Weak transcription	NH-A	brain
3	chr4:148440600-148466800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:148444400-148463400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:148447400-148469200	Weak transcription	Adipose Nuclei	Adipose
6	chr4:148447600-148468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:148450200-148463000	Weak transcription	Fetal Stomach	stomach
8	chr4:148451600-148466800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:148453800-148463400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:148455200-148463600	Weak transcription	Fetal Kidney	kidney
11	chr4:148455400-148463200	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:148455400-148463200	Weak transcription	Left Ventricle	heart
13	chr4:148457400-148464000	Strong transcription	Fetal Lung	lung
14	chr4:148457600-148463800	Weak transcription	Spleen	Spleen
15	chr4:148457800-148463400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:148457800-148467600	Weak transcription	Aorta	Aorta
17	chr4:148458000-148463400	Weak transcription	Ovary	ovary
18	chr4:148458000-148465400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr4:148458600-148465200	Weak transcription	Fetal Heart	heart
20	chr4:148459600-148463400	Weak transcription	Right Atrium	heart
21	chr4:148460200-148463600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:148460600-148463400	Weak transcription	NHDF-Ad	bronchial
23	chr4:148461400-148463400	Weak transcription	Osteobl	bone
24	chr4:148461600-148463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:148461600-148472000	Weak transcription	Lung	lung
26	chr4:148461800-148465000	Weak transcription	Fetal Intestine Small	intestine
27	chr4:148462600-148464000	Strong transcription	Stomach Smooth Muscle	stomach
28	chr4:148462600-148467200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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