Variant report

Variant	rs1032494
Chromosome Location	chr12:63473125-63473126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10784329	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10877951	0.86[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11174764	0.81[ASN][1000 genomes]
rs12227007	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12228037	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12828712	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1495029	0.80[ASN][1000 genomes]
rs36108998	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312819	0.82[ASN][1000 genomes]
rs877898	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs949824	0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs951359	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv2751108	chr12:63445933-63503952	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63463200-63473600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr12:63470200-63473600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:63470200-63478200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:63470600-63473400	Weak transcription	Fetal Heart	heart
5	chr12:63470800-63477600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:63471000-63473400	Weak transcription	Fetal Intestine Large	intestine
7	chr12:63472400-63474400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:63472800-63474200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:63472800-63480400	Enhancers	Fetal Intestine Small	intestine
10	chr12:63473000-63473200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:63473000-63473400	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links