Variant report
| Variant | rs1032528 |
|---|---|
| Chromosome Location | chr12:117330263-117330264 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135116 | Chromatin interaction |
| ENSG00000174989 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs1051879 | 0.80[EUR][1000 genomes] |
| rs11068246 | 0.93[EUR][1000 genomes] |
| rs11068255 | 0.93[EUR][1000 genomes] |
| rs12099584 | 0.80[EUR][1000 genomes] |
| rs12313248 | 0.86[EUR][1000 genomes] |
| rs12316811 | 0.93[EUR][1000 genomes] |
| rs12317604 | 0.93[EUR][1000 genomes] |
| rs12321592 | 0.93[EUR][1000 genomes] |
| rs16947122 | 0.93[EUR][1000 genomes] |
| rs16947131 | 0.93[EUR][1000 genomes] |
| rs16947144 | 0.80[EUR][1000 genomes] |
| rs16947209 | 0.80[EUR][1000 genomes] |
| rs16947233 | 0.80[EUR][1000 genomes] |
| rs4094199 | 0.80[EUR][1000 genomes] |
| rs41364651 | 0.93[EUR][1000 genomes] |
| rs4451816 | 0.80[EUR][1000 genomes] |
| rs57135901 | 0.80[EUR][1000 genomes] |
| rs58882507 | 0.80[EUR][1000 genomes] |
| rs59373313 | 0.93[EUR][1000 genomes] |
| rs60272946 | 0.80[EUR][1000 genomes] |
| rs61178788 | 0.80[EUR][1000 genomes] |
| rs61207925 | 0.80[EUR][1000 genomes] |
| rs61288722 | 0.80[EUR][1000 genomes] |
| rs7133142 | 0.86[EUR][1000 genomes] |
| rs7133609 | 0.80[EUR][1000 genomes] |
| rs7136880 | 0.86[EUR][1000 genomes] |
| rs7302713 | 0.86[EUR][1000 genomes] |
| rs7305313 | 0.93[EUR][1000 genomes] |
| rs7314897 | 0.80[EUR][1000 genomes] |
| rs73395566 | 0.93[EUR][1000 genomes] |
| rs73395571 | 0.93[EUR][1000 genomes] |
| rs73395601 | 0.93[EUR][1000 genomes] |
| rs73397424 | 0.93[EUR][1000 genomes] |
| rs73397478 | 0.80[EUR][1000 genomes] |
| rs73397488 | 0.80[EUR][1000 genomes] |
| rs73399480 | 0.80[EUR][1000 genomes] |
| rs73399483 | 0.80[EUR][1000 genomes] |
| rs73399502 | 0.80[EUR][1000 genomes] |
| rs7959860 | 0.93[EUR][1000 genomes] |
| rs7963012 | 0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832524 | chr12:117314110-117496576 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:117328600-117332800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr12:117329600-117330600 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr12:117330000-117331000 | Flanking Active TSS | K562 | blood |
