Variant report

Variant	rs1032725
Chromosome Location	chr12:32641200-32641201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444424	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10743796	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10771958	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844216	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844217	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844218	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10844219	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10844220	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1964035	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389037	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7296494	0.92[CEU][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7312690	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7961107	0.93[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.90[LWK][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7961486	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs7977566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2751096	chr12:32280340-32702784	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1054191	chr12:32534619-32733066	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv541455	chr12:32534619-32733066	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv3342938	chr12:32551041-32716745	Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv898970	chr12:32622097-32680236	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1795417	chr12:32635183-32648257	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32594600-32659000	Weak transcription	Esophagus	oesophagus
2	chr12:32619600-32642000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:32621800-32654000	Weak transcription	Lung	lung
4	chr12:32625000-32655800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr12:32625200-32655200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:32629400-32643600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr12:32629600-32643000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr12:32631800-32643600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr12:32632000-32643600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr12:32634000-32655000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr12:32636800-32642200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:32636800-32644200	Weak transcription	Right Ventricle	heart
13	chr12:32636800-32646000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:32636800-32650800	Weak transcription	Fetal Muscle Leg	muscle
15	chr12:32637000-32643800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr12:32637200-32646000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:32637400-32643600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr12:32637600-32643800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr12:32638800-32642400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr12:32639000-32655000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:32639200-32643800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr12:32639400-32642200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr12:32639400-32644200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:32639400-32647600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr12:32639400-32653800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr12:32639400-32653800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr12:32639400-32653800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr12:32639600-32644200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:32639600-32644200	Enhancers	HUVEC	blood vessel
30	chr12:32639600-32646400	Weak transcription	Fetal Intestine Large	intestine
31	chr12:32639800-32643000	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr12:32639800-32643600	Weak transcription	Stomach Mucosa	stomach
33	chr12:32640000-32641200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr12:32640000-32647400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:32640200-32642600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr12:32640200-32651000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr12:32640800-32641200	Enhancers	Brain Cingulate Gyrus	brain
38	chr12:32640800-32641200	Active TSS	Brain Hippocampus Middle	brain
39	chr12:32640800-32641600	Enhancers	Fetal Heart	heart
40	chr12:32640800-32642000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr12:32640800-32645800	Weak transcription	Left Ventricle	heart
42	chr12:32640800-32646200	Weak transcription	Gastric	stomach
43	chr12:32640800-32646200	Weak transcription	Pancreas	Pancrea
44	chr12:32640800-32646200	Weak transcription	Psoas Muscle	Psoas
45	chr12:32640800-32647600	Weak transcription	Right Atrium	heart
46	chr12:32641000-32641200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr12:32641000-32641200	Enhancers	Primary B cells from cord blood	blood
48	chr12:32641000-32642200	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr12:32641000-32647600	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr12:32641000-32651000	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links