Variant report

Variant	rs1032831
Chromosome Location	chr3:100474649-100474650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100474203..100477439-chr3:100482116..100484278,3	K562	blood:
2	chr3:100473925..100475796-chr3:100476025..100478809,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1143777	1.00[EUR][1000 genomes]
rs1185984	1.00[EUR][1000 genomes]
rs1300266	1.00[EUR][1000 genomes]
rs61377609	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751968	chr3:100299329-100476713	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv432466	chr3:100299329-100476713	Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2751969	chr3:100312499-100479384	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv2751972	chr3:100342493-100493062	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv432469	chr3:100342493-100493062	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	esv2751973	chr3:100354170-100476713	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	esv2751974	chr3:100354170-100476713	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100429800-100475000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:100434400-100478200	Weak transcription	Spleen	Spleen
3	chr3:100437600-100475000	Strong transcription	Placenta	Placenta
4	chr3:100441000-100479400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:100445400-100475600	Weak transcription	Pancreas	Pancrea
6	chr3:100447600-100477200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:100450000-100501000	Weak transcription	Esophagus	oesophagus
8	chr3:100453200-100479000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:100457200-100474800	Strong transcription	NHDF-Ad	bronchial
10	chr3:100457200-100480200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:100459400-100478200	Weak transcription	Fetal Stomach	stomach
12	chr3:100463600-100474800	Strong transcription	HSMMtube	muscle
13	chr3:100465600-100478000	Weak transcription	Aorta	Aorta
14	chr3:100465600-100478000	Weak transcription	Fetal Heart	heart
15	chr3:100467400-100475800	Weak transcription	Thymus	Thymus
16	chr3:100467400-100497600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:100468200-100488600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:100469000-100475800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:100469400-100480200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:100469600-100479200	Weak transcription	Fetal Brain Male	brain
21	chr3:100469800-100477600	Weak transcription	K562	blood
22	chr3:100469800-100498200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:100469800-100501400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:100470200-100498400	Weak transcription	Right Ventricle	heart
25	chr3:100471000-100476000	Weak transcription	HUVEC	blood vessel
26	chr3:100471000-100477600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr3:100471000-100495800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr3:100471200-100478200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr3:100471200-100480200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:100471600-100475600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr3:100471600-100478400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:100471600-100500400	Weak transcription	Lung	lung
33	chr3:100471800-100475200	Weak transcription	NH-A	brain
34	chr3:100471800-100475800	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:100471800-100479400	Weak transcription	Fetal Kidney	kidney
36	chr3:100471800-100486200	Weak transcription	Brain Substantia Nigra	brain
37	chr3:100471800-100494600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:100471800-100502000	Weak transcription	Brain Anterior Caudate	brain
39	chr3:100472000-100475800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr3:100472200-100476000	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr3:100472600-100475800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr3:100472600-100484600	Weak transcription	NHEK	skin
43	chr3:100472800-100475000	Weak transcription	Psoas Muscle	Psoas
44	chr3:100472800-100475600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr3:100472800-100476600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:100472800-100478200	Weak transcription	Primary hematopoietic stem cells	blood
47	chr3:100472800-100482800	Weak transcription	NHLF	lung
48	chr3:100472800-100494400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr3:100473000-100475200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:100473000-100475800	Weak transcription	Fetal Thymus	thymus

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