Variant report

Variant	rs1032887
Chromosome Location	chr16:12397078-12397079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10500378	0.86[ASN][1000 genomes]
rs10500380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12447994	0.86[ASN][1000 genomes]
rs13331380	0.87[ASN][1000 genomes]
rs13332083	0.87[ASN][1000 genomes]
rs13332306	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs13380622	0.91[ASN][1000 genomes]
rs16959078	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16959080	0.91[ASN][1000 genomes]
rs16959097	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959100	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959126	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959130	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16959197	0.87[ASN][1000 genomes]
rs16959253	0.87[ASN][1000 genomes]
rs16959350	1.00[CEU][hapmap]
rs2271269	0.91[ASN][1000 genomes]
rs28372578	0.87[ASN][1000 genomes]
rs28408454	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28472378	0.87[ASN][1000 genomes]
rs28496413	0.87[ASN][1000 genomes]
rs41325045	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs56836971	0.87[ASN][1000 genomes]
rs57011047	0.87[ASN][1000 genomes]
rs60011426	0.87[ASN][1000 genomes]
rs60280624	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61159108	0.87[ASN][1000 genomes]
rs6498273	0.91[ASN][1000 genomes]
rs7187929	0.91[ASN][1000 genomes]
rs7189091	0.91[ASN][1000 genomes]
rs73506137	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73508005	0.87[ASN][1000 genomes]
rs746311	0.87[ASN][1000 genomes]
rs746312	0.87[ASN][1000 genomes]
rs8058627	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062145	0.91[ASN][1000 genomes]
rs870641	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905948	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922894	0.87[ASN][1000 genomes]
rs9926796	1.00[CEU][hapmap]
rs9927344	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9929445	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9932158	1.00[CEU][hapmap]
rs9933058	0.87[ASN][1000 genomes]
rs9940308	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043096	chr16:12013915-12840769	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv833141	chr16:12314613-12487992	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv457411	chr16:12363304-12520199	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv571462	chr16:12363304-12520199	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv571463	chr16:12367791-12783535	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1045385	chr16:12376389-12517006	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv542748	chr16:12376389-12517006	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:12359800-12418000	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr16:12371400-12456800	Weak transcription	Aorta	Aorta
3	chr16:12373400-12414200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr16:12374000-12397400	Weak transcription	Ovary	ovary
5	chr16:12374200-12417200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr16:12383200-12407800	Weak transcription	Gastric	stomach
7	chr16:12384400-12409000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr16:12385400-12399200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:12385800-12410800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr16:12386400-12401600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:12388000-12398600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr16:12388600-12408200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr16:12389800-12397400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:12389800-12398400	Weak transcription	NHEK	skin
15	chr16:12389800-12398800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr16:12391200-12397200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr16:12391200-12397600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr16:12393800-12397800	Strong transcription	GM12878-XiMat	blood
19	chr16:12394800-12398400	Weak transcription	Fetal Kidney	kidney
20	chr16:12395000-12400000	Weak transcription	Fetal Stomach	stomach
21	chr16:12395000-12403200	Weak transcription	Colon Smooth Muscle	Colon
22	chr16:12395000-12409200	Weak transcription	Liver	Liver
23	chr16:12395200-12399800	Weak transcription	Brain Substantia Nigra	brain
24	chr16:12395200-12400000	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:12395200-12400200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr16:12395400-12397600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr16:12395400-12397600	Weak transcription	Fetal Heart	heart
28	chr16:12395400-12401800	Weak transcription	Lung	lung
29	chr16:12395400-12401800	Weak transcription	Spleen	Spleen
30	chr16:12395400-12408000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr16:12395400-12413800	Weak transcription	Left Ventricle	heart
32	chr16:12395600-12398800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr16:12395600-12401000	Weak transcription	Stomach Smooth Muscle	stomach
34	chr16:12395600-12405200	Weak transcription	Esophagus	oesophagus
35	chr16:12395600-12405200	Weak transcription	Right Ventricle	heart
36	chr16:12395600-12408200	Weak transcription	Pancreas	Pancrea
37	chr16:12395600-12409400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:12395600-12417200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr16:12395800-12397400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr16:12396000-12405200	Weak transcription	Adipose Nuclei	Adipose
41	chr16:12396000-12414800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr16:12396200-12414000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr16:12396800-12401200	Weak transcription	Primary B cells from cord blood	blood
44	chr16:12396800-12416400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr16:12397000-12397600	Weak transcription	Brain Germinal Matrix	brain
46	chr16:12397000-12398200	Strong transcription	Primary T cells from cord blood	blood
47	chr16:12397000-12399000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links