Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1033729	0.92[CEU][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2076776	0.87[AMR][1000 genomes]
rs2145403	0.83[AFR][1000 genomes]
rs601662	0.82[CEU][hapmap]
rs603154	0.82[AMR][1000 genomes]
rs622299	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs629799	0.82[CEU][hapmap]
rs634144	0.82[CEU][hapmap]
rs635922	0.85[CEU][hapmap];0.82[AMR][1000 genomes]
rs636879	0.82[CEU][hapmap]
rs647513	0.88[AMR][1000 genomes]
rs647962	0.85[CEU][hapmap];0.87[AMR][1000 genomes]
rs648939	0.88[AMR][1000 genomes]
rs649798	0.88[AMR][1000 genomes]
rs658444	0.88[AMR][1000 genomes]
rs659330	0.88[AMR][1000 genomes]
rs662377	0.82[CEU][hapmap]
rs664142	0.82[CEU][hapmap];0.86[AMR][1000 genomes]
rs668551	0.82[CEU][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes]
rs669444	0.84[ASW][hapmap];0.92[CEU][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs671137	0.84[ASW][hapmap];0.92[CEU][hapmap];0.87[MKK][hapmap];0.93[TSI][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs682584	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs706476	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1000266	chr1:57291371-57319480	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57310600-57315200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:57310800-57315200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:57311000-57315000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:57311000-57315600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:57311200-57315800	Weak transcription	Fetal Brain Female	brain
6	chr1:57311600-57315600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:57311600-57315800	Weak transcription	HepG2	liver
8	chr1:57313800-57315000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:57314400-57317400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:57314600-57317000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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