Variant report

Variant	rs1033725
Chromosome Location	chr6:166707250-166707251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12210262	0.90[ASN][1000 genomes]
rs13216770	0.83[AMR][1000 genomes]
rs34348291	0.85[AMR][1000 genomes]
rs34375036	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62439094	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886934	chr6:166642850-166747572	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv886935	chr6:166704744-166726566	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1033725	MGC35308	cis	multi-tissue	Pritchard
rs1033725	PRR18	cis	Lymphoblastoid	GTEx
rs1033725	PRR18	cis	lymphoblastoid	seeQTL
rs1033725	HGC6.3	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166705800-166709400	Enhancers	Brain Cingulate Gyrus	brain
2	chr6:166706000-166711000	Enhancers	Brain Substantia Nigra	brain
3	chr6:166706200-166710600	Enhancers	Brain Angular Gyrus	brain
4	chr6:166706400-166707800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:166706400-166709400	Enhancers	Brain Hippocampus Middle	brain
6	chr6:166706600-166709600	Enhancers	Brain Anterior Caudate	brain
7	chr6:166707200-166708400	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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