Variant report

Variant	rs1034794
Chromosome Location	chr7:124441402-124441403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124427415..124429637-chr7:124440473..124441995,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10230948	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10234698	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10241745	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10268290	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10280030	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1034795	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766412	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11767519	0.85[ASN][1000 genomes]
rs11768553	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11770818	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11772420	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11972411	0.85[ASN][1000 genomes]
rs12532038	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533661	0.85[ASN][1000 genomes]
rs12534967	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12534983	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12537983	0.85[ASN][1000 genomes]
rs12538061	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12539481	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12706625	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12706627	0.85[ASN][1000 genomes]
rs13222197	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13228358	0.83[ASN][1000 genomes]
rs1541417	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17147465	0.99[ASN][1000 genomes]
rs2101100	0.83[ASN][1000 genomes]
rs2291207	0.81[ASN][1000 genomes]
rs2402754	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28730874	0.86[ASN][1000 genomes]
rs33964002	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34326887	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35423300	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35550222	0.94[ASN][1000 genomes]
rs4141073	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4141075	0.89[ASN][1000 genomes]
rs4360236	0.83[ASN][1000 genomes]
rs4501522	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4639456	0.89[ASN][1000 genomes]
rs4728005	0.89[ASN][1000 genomes]
rs4728007	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731210	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60678110	0.83[ASN][1000 genomes]
rs62480260	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62480274	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6466951	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6466959	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6943703	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6943797	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6945563	0.85[ASN][1000 genomes]
rs6946962	0.85[ASN][1000 genomes]
rs6963885	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6968018	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs716991	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7782296	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7782351	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7784168	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7784285	0.85[ASN][1000 genomes]
rs7787804	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7794637	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7795610	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7796751	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7801755	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7804052	0.85[ASN][1000 genomes]
rs7806890	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9656320	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124433600-124442200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:124440800-124441600	Enhancers	Fetal Brain Female	brain

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