Variant report

Variant	rs1035122
Chromosome Location	chr2:10339147-10339148
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYS1-7	chr2:10338881-10339400	NONHSAT069093

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7560636	0.87[EUR][1000 genomes]
rs7592001	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3344936	chr2:10339031-10342870	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10304400-10339800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:10313000-10344400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:10314000-10340400	Weak transcription	HepG2	liver
5	chr2:10325600-10342800	Weak transcription	Fetal Brain Female	brain
6	chr2:10326600-10339400	Strong transcription	Thymus	Thymus
7	chr2:10333000-10347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:10336800-10344600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:10337200-10342800	Weak transcription	Gastric	stomach
11	chr2:10337200-10349600	Weak transcription	Spleen	Spleen
12	chr2:10337600-10342800	Weak transcription	Fetal Brain Male	brain
13	chr2:10337800-10339400	ZNF genes & repeats	Fetal Stomach	stomach
14	chr2:10338000-10339400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:10338000-10339400	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr2:10338200-10339200	Strong transcription	Fetal Thymus	thymus
17	chr2:10338600-10339200	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr2:10338600-10351200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr2:10338800-10339400	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:10338800-10342400	Weak transcription	K562	blood
21	chr2:10338800-10344400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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