Variant report

Variant	rs1035971
Chromosome Location	chr7:128069662-128069663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000273270	Chromatin interaction
ENSG00000165055	Chromatin interaction
ENSG00000242588	Chromatin interaction
ENSG00000240758	Chromatin interaction
ENSG00000135245	Chromatin interaction
ENSG00000273184	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10229394	0.94[YRI][hapmap];0.91[AFR][1000 genomes]
rs11980741	0.92[TSI][hapmap]
rs1560214	0.87[ASW][hapmap];0.82[LWK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs17152072	0.86[JPT][hapmap]
rs2288548	0.92[TSI][hapmap]
rs2288549	0.91[TSI][hapmap]
rs2402892	0.95[CEU][hapmap];0.92[TSI][hapmap]
rs2562730	0.89[TSI][hapmap]
rs3793165	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4728108	0.86[ASW][hapmap];0.92[TSI][hapmap];0.81[AFR][1000 genomes]
rs4731448	0.86[TSI][hapmap]
rs4731453	0.92[TSI][hapmap]
rs4731454	0.87[ASW][hapmap];0.82[LWK][hapmap];0.92[TSI][hapmap];0.89[YRI][hapmap]
rs6467178	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	nsv889191	chr7:127973133-128073326	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1035971	FAM71F2	cis	cerebellum	SCAN
rs1035971	PRRT4	cis	Esophagus Mucosa	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128063000-128071600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:128064200-128070800	Weak transcription	Adipose Nuclei	Adipose
4	chr7:128068400-128070400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:128068400-128070600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:128069000-128070400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:128069200-128070200	Weak transcription	Placenta	Placenta
8	chr7:128069400-128071000	Enhancers	A549	lung
9	chr7:128069600-128069800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr7:128069600-128070000	Bivalent Enhancer	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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