Variant report

Variant	rs1036167
Chromosome Location	chr2:56222179-56222180
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11682464	0.88[EUR][1000 genomes]
rs11899989	0.93[EUR][1000 genomes]
rs12989921	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs13005940	0.84[EUR][1000 genomes]
rs35880035	0.95[EUR][1000 genomes]
rs6743895	0.86[EUR][1000 genomes]
rs6751861	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56217000-56223200	Enhancers	HUVEC	blood vessel
2	chr2:56217200-56222800	Weak transcription	Pancreas	Pancrea
3	chr2:56218000-56222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr2:56218400-56222200	Enhancers	HSMM	muscle
5	chr2:56218400-56223000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:56220000-56222200	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:56220400-56225800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:56220600-56223600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:56221000-56222400	Weak transcription	Hela-S3	cervix
10	chr2:56221200-56223600	Enhancers	A549	lung
11	chr2:56221400-56222200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:56222000-56226000	Weak transcription	Osteobl	bone
13	chr2:56222000-56229600	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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