Variant report

Variant	rs1038138
Chromosome Location	chr13:95817396-95817397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508022	0.82[MEX][hapmap]
rs12427813	0.85[CHB][hapmap];0.86[EUR][1000 genomes]
rs1729764	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1729767	0.94[CHD][hapmap]
rs1729770	1.00[JPT][hapmap]
rs3765535	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4148501	1.00[CEU][hapmap];0.82[TSI][hapmap];0.91[EUR][1000 genomes]
rs55956509	0.89[EUR][1000 genomes]
rs74105442	0.84[EUR][1000 genomes]
rs7993619	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533659	chr13:95757713-96042149	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv832689	chr13:95759073-95921308	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95752200-95823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr13:95752200-95844200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:95756400-95828200	Weak transcription	HSMM	muscle
4	chr13:95768200-95819000	Weak transcription	Fetal Intestine Small	intestine
5	chr13:95778800-95833400	Weak transcription	Spleen	Spleen
6	chr13:95782000-95828000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr13:95787800-95827200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr13:95789200-95817600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:95791000-95821400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr13:95799200-95833400	Weak transcription	HSMMtube	muscle
11	chr13:95806600-95817400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr13:95806800-95826800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr13:95807000-95817400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr13:95807000-95826800	Weak transcription	NH-A	brain
15	chr13:95807000-95846000	Weak transcription	Brain Substantia Nigra	brain
16	chr13:95807000-95857800	Weak transcription	Esophagus	oesophagus
17	chr13:95807200-95820000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr13:95807200-95844400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr13:95807200-95865600	Weak transcription	Colonic Mucosa	Colon
20	chr13:95807400-95818400	Weak transcription	HMEC	breast
21	chr13:95807400-95827000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr13:95807400-95828000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr13:95807400-95837800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr13:95807600-95824600	Weak transcription	HUVEC	blood vessel
25	chr13:95807600-95829000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:95807800-95825400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr13:95808200-95826600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:95808200-95841800	Weak transcription	Osteobl	bone
29	chr13:95808400-95826200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:95808400-95833400	Weak transcription	Fetal Kidney	kidney
31	chr13:95808400-95854600	Weak transcription	NHEK	skin
32	chr13:95808600-95827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:95808600-95827200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr13:95809000-95829200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:95810200-95817600	Weak transcription	Ovary	ovary
36	chr13:95810400-95822200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr13:95810400-95829000	Weak transcription	Adipose Nuclei	Adipose
38	chr13:95810400-95836200	Weak transcription	Fetal Thymus	thymus
39	chr13:95810400-95836400	Weak transcription	Thymus	Thymus
40	chr13:95810800-95817800	Weak transcription	Left Ventricle	heart
41	chr13:95810800-95826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr13:95811000-95818000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr13:95812400-95831400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr13:95812800-95817600	Weak transcription	Colon Smooth Muscle	Colon
45	chr13:95812800-95826800	Weak transcription	Gastric	stomach
46	chr13:95812800-95833400	Weak transcription	Pancreas	Pancrea
47	chr13:95813200-95817600	Weak transcription	Lung	lung
48	chr13:95813200-95824000	Weak transcription	Fetal Lung	lung
49	chr13:95813200-95825400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr13:95813200-95858000	Weak transcription	Aorta	Aorta

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