Variant report

Variant	rs1038173
Chromosome Location	chr8:20373622-20373623
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10097900	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1480346	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17092690	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1904784	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28484832	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28678636	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34290345	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4244462	0.87[EUR][1000 genomes]
rs4922212	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56305022	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71512766	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7818371	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2758152	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759603	chr8:20228949-20514807	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv469890	chr8:20239114-20445136	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv482881	chr8:20239114-20445136	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv916454	chr8:20342959-20531705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20367400-20377000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:20371400-20375400	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:20372600-20374000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:20373000-20373800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
5	chr8:20373000-20374200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:20373200-20373800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr8:20373200-20373800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:20373200-20373800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:20373200-20374400	Enhancers	Primary T cells from cord blood	blood
10	chr8:20373200-20374400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:20373200-20374400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:20373200-20374600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr8:20373400-20373800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
14	chr8:20373400-20374600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr8:20373400-20374600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr8:20373600-20374000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:20373600-20374600	Enhancers	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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