Variant report

Variant	rs1038390
Chromosome Location	chr6:143827102-143827103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143785325..143788129-chr6:143826043..143827564,2	K562	blood:
2	chr6:143786225..143788129-chr6:143826043..143828560,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10809	1.00[ASW][hapmap]
rs1569589	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6900671	0.86[EUR][1000 genomes]
rs9321915	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1038390	HIVEP2	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143772600-143832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:143773400-143832000	Weak transcription	Fetal Brain Male	brain
3	chr6:143781000-143832000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:143790200-143831600	Weak transcription	Esophagus	oesophagus
5	chr6:143790200-143831600	Weak transcription	Gastric	stomach
6	chr6:143795200-143827400	Weak transcription	Aorta	Aorta
7	chr6:143795800-143831800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:143797600-143831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:143800800-143831000	Weak transcription	Colon Smooth Muscle	Colon
10	chr6:143805200-143827800	Weak transcription	Fetal Heart	heart
11	chr6:143811400-143832000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:143811800-143829400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:143812000-143827400	Weak transcription	Pancreas	Pancrea
14	chr6:143812200-143831600	Weak transcription	Right Ventricle	heart
15	chr6:143812400-143829600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:143812400-143832200	Weak transcription	Spleen	Spleen
17	chr6:143812600-143831800	Weak transcription	NHEK	skin
18	chr6:143812600-143832000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:143813400-143828400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr6:143813400-143829600	Strong transcription	Fetal Intestine Large	intestine
21	chr6:143813800-143828400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr6:143814200-143828200	Strong transcription	HSMM	muscle
23	chr6:143814200-143828800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:143814200-143829600	Strong transcription	K562	blood
25	chr6:143814400-143830200	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr6:143814600-143828200	Strong transcription	HepG2	liver
27	chr6:143814600-143828600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:143814600-143831000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:143814800-143827200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:143814800-143828200	Strong transcription	Left Ventricle	heart
31	chr6:143814800-143828200	Strong transcription	NHLF	lung
32	chr6:143814800-143828400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr6:143814800-143828400	Strong transcription	Adipose Nuclei	Adipose
34	chr6:143814800-143829000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:143814800-143829200	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr6:143814800-143829400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr6:143814800-143831400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr6:143815000-143828400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:143815000-143829000	Strong transcription	Liver	Liver
40	chr6:143815200-143828400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr6:143815200-143830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:143815200-143830800	Strong transcription	Placenta	Placenta
43	chr6:143815600-143831800	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:143815800-143830200	Weak transcription	Hela-S3	cervix
45	chr6:143815800-143832200	Weak transcription	Small Intestine	intestine
46	chr6:143816600-143829000	Strong transcription	Fetal Muscle Leg	muscle
47	chr6:143817000-143830400	Weak transcription	Stomach Mucosa	stomach
48	chr6:143817400-143831000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr6:143817800-143832200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr6:143819000-143831800	Weak transcription	Brain Angular Gyrus	brain

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