The 2.0 version of rSNPBase

Variant report

Variant rs10399799
Chromosome Location chr1:144598069-144598070
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:144594400-144604600 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:144594600-144598200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:144594600-144598600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:144594600-144598600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:144594600-144600800 Weak transcription Colonic Mucosa Colon
6 chr1:144594600-144601800 Weak transcription Esophagus oesophagus
7 chr1:144594600-144603800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:144594600-144621200 Weak transcription Gastric stomach
9 chr1:144594600-144622000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr1:144594600-144622000 Weak transcription Placenta Placenta
11 chr1:144594800-144598400 Weak transcription Primary T helper naive cells from peripheral blood blood
12 chr1:144594800-144598600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr1:144594800-144598600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
14 chr1:144594800-144598600 Weak transcription Brain Anterior Caudate brain
15 chr1:144594800-144598600 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr1:144594800-144598600 Weak transcription Spleen Spleen
17 chr1:144594800-144598800 Weak transcription Brain Cingulate Gyrus brain
18 chr1:144594800-144599000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr1:144594800-144602200 Weak transcription Skeletal Muscle Male skeletal muscle
20 chr1:144594800-144602800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
21 chr1:144594800-144604000 Weak transcription K562 blood
22 chr1:144594800-144607200 Weak transcription Left Ventricle heart
23 chr1:144594800-144607200 Weak transcription Lung lung
24 chr1:144594800-144607200 Weak transcription Stomach Smooth Muscle stomach
25 chr1:144594800-144607600 Weak transcription Brain Substantia Nigra brain
26 chr1:144594800-144608000 Weak transcription Brain Inferior Temporal Lobe brain
27 chr1:144594800-144608000 Weak transcription Fetal Brain Male brain
28 chr1:144594800-144608600 Weak transcription Psoas Muscle Psoas
29 chr1:144594800-144609000 Weak transcription A549 lung
30 chr1:144594800-144609000 Weak transcription GM12878-XiMat blood
31 chr1:144594800-144609200 Weak transcription Brain Hippocampus Middle brain
32 chr1:144594800-144618000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr1:144594800-144618000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr1:144594800-144618000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
35 chr1:144594800-144618000 Weak transcription Adipose Nuclei Adipose
36 chr1:144594800-144619400 Weak transcription Aorta Aorta
37 chr1:144594800-144620000 Weak transcription Rectal Smooth Muscle rectum
38 chr1:144594800-144620200 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr1:144594800-144620600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:144594800-144621200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr1:144594800-144621200 Weak transcription Fetal Lung lung
42 chr1:144594800-144621200 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr1:144594800-144621400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr1:144594800-144621400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr1:144594800-144621600 Weak transcription HSMM muscle
46 chr1:144594800-144621800 Weak transcription Brain Germinal Matrix brain
47 chr1:144594800-144621800 Weak transcription HSMMtube muscle
48 chr1:144594800-144622000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
49 chr1:144594800-144622000 Weak transcription Duodenum Mucosa Duodenum
50 chr1:144594800-144623400 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015