Variant report

Variant	rs10400143
Chromosome Location	chr10:49715989-49715990
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:49707073..49711100-chr10:49713490..49716250,3	K562	blood:
2	chr10:49713932..49717816-chr10:49742746..49746059,3	K562	blood:
3	chr10:49712691..49716238-chr10:49728195..49733174,5	K562	blood:
4	chr10:49637915..49640231-chr10:49714306..49716127,2	K562	blood:
5	chr10:49615597..49618030-chr10:49714235..49716218,3	K562	blood:
6	chr10:49714827..49719872-chr10:49861427..49864767,4	K562	blood:
7	chr10:49715021..49718761-chr10:49720982..49725227,3	K562	blood:
8	chr10:49713826..49717579-chr10:49717710..49719906,5	K562	blood:
9	chr10:49579606..49581410-chr10:49715776..49718367,2	K562	blood:
10	chr10:49714746..49717330-chr10:49717821..49719600,2	MCF-7	breast:
11	chr10:49714562..49719396-chr10:49719920..49724610,6	K562	blood:
12	chr10:49715672..49716365-chr16:70778131..70778782,2	MCF-7	breast:
13	chr10:49698265..49700401-chr10:49714707..49717015,2	K562	blood:
14	chr10:49715470..49718862-chr10:49725582..49728629,3	K562	blood:
15	chr10:49703894..49706471-chr10:49715514..49717897,2	K562	blood:
16	chr10:49571145..49574084-chr10:49715215..49717894,2	MCF-7	breast:
17	chr10:49663675..49666041-chr10:49714852..49717938,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000248682	Chromatin interaction
ENSG00000128805	Chromatin interaction
ENSG00000107643	Chromatin interaction
ENSG00000103043	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11812546	0.90[ASN][1000 genomes]
rs4080665	0.82[ASN][1000 genomes]
rs60214846	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72783094	0.85[ASN][1000 genomes]
rs72783101	0.85[ASN][1000 genomes]
rs72785120	0.83[ASN][1000 genomes]
rs73303077	0.82[ASN][1000 genomes]
rs7895980	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv550814	chr10:49705142-49735563	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv516006	chr10:49707942-49723300	Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49698000-49731200	Weak transcription	Aorta	Aorta
2	chr10:49701600-49716400	Weak transcription	Right Atrium	heart
3	chr10:49702400-49718200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:49705400-49716600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:49706000-49716600	Weak transcription	HMEC	breast
6	chr10:49706000-49723400	Weak transcription	NH-A	brain
7	chr10:49706200-49716400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:49707400-49716600	Weak transcription	Fetal Stomach	stomach
9	chr10:49707600-49716600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:49709200-49720600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:49709600-49716800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:49710000-49718600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr10:49710600-49718600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:49710600-49719200	Weak transcription	Pancreas	Pancrea
15	chr10:49710800-49716400	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:49711800-49716400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:49711800-49718400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:49712400-49716400	Weak transcription	Spleen	Spleen
19	chr10:49712600-49717800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:49712800-49716200	Weak transcription	NHDF-Ad	bronchial
21	chr10:49712800-49716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:49712800-49718000	Weak transcription	Fetal Thymus	thymus
23	chr10:49713000-49716400	Weak transcription	Ovary	ovary
24	chr10:49713000-49716800	Weak transcription	Fetal Heart	heart
25	chr10:49713000-49719200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:49713200-49716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:49714000-49716800	Weak transcription	Brain Anterior Caudate	brain
28	chr10:49714000-49727200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:49714400-49716400	Weak transcription	Osteobl	bone
30	chr10:49714400-49716600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr10:49714600-49716400	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:49714600-49717400	Enhancers	K562	blood
33	chr10:49714800-49716200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:49715000-49717400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:49715200-49716000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr10:49715200-49716400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr10:49715200-49716600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr10:49715200-49716800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr10:49715200-49717200	Genic enhancers	NHLF	lung
40	chr10:49715400-49718200	Enhancers	HUVEC	blood vessel
41	chr10:49715600-49716800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr10:49715600-49717000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:49715600-49717000	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr10:49715800-49716000	Active TSS	HSMM	muscle
45	chr10:49715800-49716200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:49715800-49727800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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