Variant report

Variant	rs10400161
Chromosome Location	chr10:3983362-3983363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3979374..3981168-chr10:3983217..3984855,2	K562	blood:
2	chr10:3825700..3828313-chr10:3981888..3984781,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2935285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3957400-3985400	Weak transcription	Right Ventricle	heart
2	chr10:3977200-3985000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr10:3977400-3988400	Weak transcription	Left Ventricle	heart
4	chr10:3977800-3983800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:3977800-3986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:3978200-3985800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:3978200-3987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:3978400-3983400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:3978600-3984400	Weak transcription	HMEC	breast
10	chr10:3978600-3988000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr10:3979000-3983400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr10:3979000-3983800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:3979000-3984400	Weak transcription	NHDF-Ad	bronchial
14	chr10:3979000-3984600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr10:3979000-3987800	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:3979000-3988000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:3979000-3994400	Weak transcription	Stomach Mucosa	stomach
18	chr10:3979200-3983800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:3979200-3984600	Weak transcription	HUVEC	blood vessel
20	chr10:3979200-3984800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:3979200-3985200	Weak transcription	Esophagus	oesophagus
22	chr10:3981600-3983800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:3981800-4001800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:3983200-3983600	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr10:3983200-3983600	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:3983200-3983800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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