Variant report

Variant	rs10400278
Chromosome Location	chr11:6100655-6100656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12418068	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1350995	1.00[CEU][hapmap]
rs1381912	0.88[ASN][1000 genomes]
rs1381913	0.88[ASN][1000 genomes]
rs1599693	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2014211	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2219723	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2344346	0.91[ASN][1000 genomes]
rs325632	0.91[ASN][1000 genomes]
rs325633	0.91[ASN][1000 genomes]
rs325635	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs325638	1.00[CEU][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs325659	0.88[ASN][1000 genomes]
rs325660	0.88[ASN][1000 genomes]
rs325663	0.88[ASN][1000 genomes]
rs325664	0.85[ASN][1000 genomes]
rs325695	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs325698	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs34559340	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34953443	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35945236	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4758387	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4758390	0.91[ASN][1000 genomes]
rs6578739	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67085620	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7950024	0.91[ASN][1000 genomes]
rs7950500	0.91[ASN][1000 genomes]
rs992346	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1052156	chr11:6003428-6107778	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv1047794	chr11:6003428-6116105	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	esv19708	chr11:6076999-6117545	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:6099400-6101000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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