Variant report

Variant	rs10400612
Chromosome Location	chr13:49378829-49378830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17072196	0.83[AFR][1000 genomes]
rs7323683	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv2758327	chr13:49283983-49472517	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2759936	chr13:49283983-49472517	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832606	chr13:49352212-49506009	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49366800-49383000	Weak transcription	Osteobl	bone
2	chr13:49375800-49379000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:49376000-49379000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr13:49376000-49383400	Weak transcription	NHLF	lung
5	chr13:49376200-49379000	Weak transcription	NHDF-Ad	bronchial
6	chr13:49376200-49379200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr13:49376400-49379000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:49378000-49380600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:49378200-49379600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:49378400-49380400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr13:49378600-49379000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:49378800-49379200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr13:49378800-49379200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr13:49378800-49380600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr13:49378800-49380800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:49378800-49380800	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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