Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LYPD5-2	chr19:44299564-44299810	ENSG00000268601.1

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10401170	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10405457	0.81[ASN][1000 genomes]
rs10421887	0.81[ASN][1000 genomes]
rs10422990	0.81[ASN][1000 genomes]
rs10426528	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12460161	0.81[ASN][1000 genomes]
rs12974061	0.81[ASN][1000 genomes]
rs349045	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs349046	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349047	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349048	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs349049	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs349050	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs349053	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs349055	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56103707	0.92[ASN][1000 genomes]
rs56344893	0.81[ASN][1000 genomes]
rs56681946	0.81[ASN][1000 genomes]
rs60184524	0.81[ASN][1000 genomes]
rs62116990	0.97[ASN][1000 genomes]
rs62116991	0.92[ASN][1000 genomes]
rs73048670	0.81[ASN][1000 genomes]
rs8104447	1.00[ASN][1000 genomes]
rs8111664	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10401203	AC115522.3	cis	Skin Sun Exposed Lower leg	GTEx
rs10401203	KCNN4	cis	Whole Blood	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44289400-44302600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:44289800-44300800	Weak transcription	Placenta	Placenta
3	chr19:44290000-44302400	Weak transcription	NHEK	skin
4	chr19:44290200-44302200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr19:44298400-44300000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:44299000-44302000	Weak transcription	Brain Angular Gyrus	brain
7	chr19:44299600-44301400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr19:44299600-44302200	Weak transcription	Brain Anterior Caudate	brain
9	chr19:44299600-44302400	Weak transcription	Brain Cingulate Gyrus	brain

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