Variant report

Variant	rs10401525
Chromosome Location	chr19:37658979-37658980
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10401380	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10401561	0.82[EUR][1000 genomes]
rs10402050	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10404069	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10404973	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10405372	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10406612	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10407014	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10407224	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10407265	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10408199	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10410905	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10411037	0.83[EUR][1000 genomes]
rs10411176	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10412236	0.81[EUR][1000 genomes]
rs10413101	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10413304	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10414107	0.82[EUR][1000 genomes]
rs10414227	0.81[ASN][1000 genomes]
rs10414983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10417545	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10418314	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10419174	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10422428	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10424841	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10425441	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10426093	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11084873	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12972146	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12975869	0.81[EUR][1000 genomes]
rs12978093	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12983153	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13346284	0.82[EUR][1000 genomes]
rs1617883	0.83[EUR][1000 genomes]
rs2385412	0.82[EUR][1000 genomes]
rs28462002	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28631881	0.80[EUR][1000 genomes]
rs28660259	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28701616	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34193103	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34915391	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35522655	0.82[EUR][1000 genomes]
rs35655645	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4473303	0.92[ASN][1000 genomes]
rs4805198	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4805207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4805208	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4806406	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4806414	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62108899	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62109879	0.83[EUR][1000 genomes]
rs7246473	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7247758	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7249696	0.81[ASN][1000 genomes]
rs7259878	0.82[EUR][1000 genomes]
rs8101338	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8111936	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	esv3507199	chr19:37284708-37805639	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	esv3507200	chr19:37284708-37805639	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv3497360	chr19:37290273-37745365	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv3497361	chr19:37290273-37745365	Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv458568	chr19:37325826-37747108	Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv579461	chr19:37325826-37747108	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
11	nsv911652	chr19:37437106-37774299	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv911654	chr19:37487632-37758082	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv2477	chr19:37617348-37662207	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	esv3433517	chr19:37643755-37675928	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv911655	chr19:37646745-37758082	ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37613800-37662200	ZNF genes & repeats	Liver	Liver
2	chr19:37635200-37661400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:37635200-37661600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:37639400-37663200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:37640400-37659000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
6	chr19:37643000-37661400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr19:37643000-37662000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr19:37643200-37660800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr19:37643200-37661400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr19:37643200-37662400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:37643400-37659400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:37643400-37659600	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr19:37643400-37660800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
14	chr19:37643400-37661400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr19:37643400-37661400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr19:37643800-37662000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:37645600-37661600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr19:37646400-37662000	ZNF genes & repeats	Fetal Lung	lung
19	chr19:37651200-37660000	Strong transcription	Stomach Smooth Muscle	stomach
20	chr19:37651200-37663000	Weak transcription	HSMMtube	muscle
21	chr19:37652200-37662800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:37652600-37659000	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr19:37652600-37661200	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr19:37652600-37663000	Weak transcription	NH-A	brain
25	chr19:37652800-37663200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr19:37653200-37660600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr19:37653200-37661200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
28	chr19:37653600-37661200	Strong transcription	Osteobl	bone
29	chr19:37653800-37659200	Weak transcription	Fetal Brain Male	brain
30	chr19:37653800-37661200	Strong transcription	Placenta	Placenta
31	chr19:37654200-37660800	Strong transcription	Brain Cingulate Gyrus	brain
32	chr19:37654600-37661200	ZNF genes & repeats	Fetal Intestine Large	intestine
33	chr19:37655000-37661200	Strong transcription	Fetal Muscle Trunk	muscle
34	chr19:37655400-37660200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr19:37655400-37661200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr19:37655600-37659200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr19:37655600-37659400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr19:37655600-37659400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
39	chr19:37655600-37661200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37655600-37661200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:37655600-37661400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr19:37655600-37661600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:37655600-37661800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr19:37655800-37659000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr19:37655800-37659200	Weak transcription	Brain Angular Gyrus	brain
46	chr19:37655800-37660400	Weak transcription	NHLF	lung
47	chr19:37656000-37662800	Weak transcription	HMEC	breast
48	chr19:37656200-37659000	Weak transcription	Colon Smooth Muscle	Colon
49	chr19:37656200-37659200	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr19:37656200-37660400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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