Variant report

Variant	rs10402152
Chromosome Location	chr19:35922648-35922649
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35919970..35922702-chr19:35923038..35924620,2	MCF-7	breast:
2	chr19:35921074..35922900-chr19:35950996..35953556,2	K562	blood:
3	chr19:35615583..35617347-chr19:35922584..35925088,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KRTDAP-1	chr19:35915494-35924004	NONHSAT065841

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10414019	1.00[AMR][1000 genomes]
rs10416084	1.00[AMR][1000 genomes]
rs10416795	1.00[AMR][1000 genomes]
rs10419861	1.00[AMR][1000 genomes]
rs10423421	1.00[AMR][1000 genomes]
rs28625363	1.00[AMR][1000 genomes]
rs28626713	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35911800-35924800	Weak transcription	Liver	Liver
2	chr19:35912600-35938000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:35912800-35924600	Weak transcription	Pancreas	Pancrea
4	chr19:35920200-35925200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr19:35920600-35930000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr19:35921000-35923000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr19:35921000-35923800	Enhancers	Placenta	Placenta
8	chr19:35921000-35924600	Weak transcription	Gastric	stomach
9	chr19:35921200-35923400	Weak transcription	Colonic Mucosa	Colon
10	chr19:35921200-35923800	Weak transcription	Fetal Intestine Large	intestine
11	chr19:35921200-35925000	Weak transcription	Lung	lung
12	chr19:35921400-35922800	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr19:35921400-35926400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr19:35921600-35923400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr19:35921800-35923800	Weak transcription	Fetal Intestine Small	intestine
16	chr19:35921800-35924600	Weak transcription	Adipose Nuclei	Adipose
17	chr19:35921800-35925000	Active TSS	Duodenum Mucosa	Duodenum
18	chr19:35922200-35923200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:35922200-35923200	ZNF genes & repeats	Fetal Stomach	stomach
20	chr19:35922200-35923200	ZNF genes & repeats	GM12878-XiMat	blood
21	chr19:35922200-35924400	Weak transcription	Fetal Lung	lung
22	chr19:35922400-35923000	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr19:35922400-35923000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:35922400-35923200	ZNF genes & repeats	Spleen	Spleen
25	chr19:35922400-35925000	Weak transcription	Ovary	ovary

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