Variant report

Variant	rs10402619
Chromosome Location	chr19:39371883-39371884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:39365356..39367553-chr19:39371067..39373551,2	K562	blood:
2	chr19:39337933..39340213-chr19:39370385..39371920,2	K562	blood:
3	chr19:39361964..39363858-chr19:39371410..39374300,2	MCF-7	breast:
4	chr19:39370268..39372714-chr19:39419858..39422598,3	K562	blood:
5	chr19:39339112..39343595-chr19:39368855..39373078,6	MCF-7	breast:
6	chr19:39371803..39374474-chr19:39375523..39378350,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104835	Chromatin interaction
ENSG00000104824	Chromatin interaction
ENSG00000128626	Chromatin interaction
ENSG00000187994	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10405371	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417695	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45592833	1.00[EUR][1000 genomes]
rs57981781	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv1837023	chr19:39190588-39425722	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv1798153	chr19:39338663-39399277	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39360800-39379200	Weak transcription	NHDF-Ad	bronchial
2	chr19:39361000-39379000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:39361000-39380200	Weak transcription	Psoas Muscle	Psoas
4	chr19:39361200-39376800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr19:39365400-39379400	Weak transcription	Osteobl	bone
6	chr19:39368000-39374200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:39368600-39373400	Weak transcription	Fetal Brain Male	brain
8	chr19:39368800-39376600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr19:39368800-39378200	Genic enhancers	Fetal Muscle Leg	muscle
10	chr19:39368800-39386400	Genic enhancers	Fetal Muscle Trunk	muscle
11	chr19:39369000-39374600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr19:39369000-39379200	Weak transcription	HMEC	breast
13	chr19:39369000-39384000	Weak transcription	Right Atrium	heart
14	chr19:39369000-39386400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:39369200-39373200	Strong transcription	Brain Hippocampus Middle	brain
16	chr19:39369200-39374600	Strong transcription	Brain Germinal Matrix	brain
17	chr19:39369200-39376600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:39369200-39377800	Weak transcription	Fetal Lung	lung
19	chr19:39369200-39382800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:39369200-39389200	Weak transcription	A549	lung
21	chr19:39369400-39372400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:39369400-39374400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr19:39369400-39374600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr19:39369400-39375200	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr19:39369400-39376000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr19:39369400-39379200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr19:39369400-39382800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr19:39369400-39388800	Weak transcription	Stomach Mucosa	stomach
29	chr19:39369600-39372200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr19:39369600-39373400	Strong transcription	Brain Cingulate Gyrus	brain
31	chr19:39369600-39373600	Strong transcription	Right Ventricle	heart
32	chr19:39369600-39374600	Strong transcription	Brain Anterior Caudate	brain
33	chr19:39369600-39374600	Strong transcription	Fetal Brain Female	brain
34	chr19:39369600-39374600	Strong transcription	Lung	lung
35	chr19:39369600-39378600	Weak transcription	HUVEC	blood vessel
36	chr19:39369600-39379600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:39369800-39372200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr19:39369800-39372200	Strong transcription	Placenta	Placenta
39	chr19:39369800-39373000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr19:39369800-39373200	Weak transcription	K562	blood
41	chr19:39369800-39373600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:39369800-39374200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr19:39369800-39374600	Strong transcription	Adipose Nuclei	Adipose
44	chr19:39369800-39374600	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr19:39369800-39374600	Strong transcription	Left Ventricle	heart
46	chr19:39369800-39375000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr19:39369800-39375800	Strong transcription	Gastric	stomach
48	chr19:39369800-39375800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr19:39370000-39372200	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr19:39370000-39372200	Strong transcription	Aorta	Aorta

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