Variant report

Variant	rs10405098
Chromosome Location	chr19:44509685-44509686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44506934..44508722-chr19:44508906..44511281,4	K562	blood:
2	chr19:44506929..44508722-chr19:44508906..44512991,6	K562	blood:
3	chr19:44507222..44510776-chr19:44517439..44520079,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10407378	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs10420257	0.80[YRI][hapmap]
rs1113720	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44508000-44510800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr19:44508000-44511000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:44508000-44511600	Weak transcription	Pancreas	Pancrea
4	chr19:44508200-44510200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr19:44508200-44510800	Weak transcription	Brain Hippocampus Middle	brain
6	chr19:44508200-44510800	Weak transcription	Brain Substantia Nigra	brain
7	chr19:44508200-44510800	Weak transcription	Colon Smooth Muscle	Colon
8	chr19:44508200-44511000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr19:44508200-44511000	Weak transcription	Aorta	Aorta
10	chr19:44508200-44511000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr19:44508200-44511000	Weak transcription	Esophagus	oesophagus
12	chr19:44508200-44511000	Weak transcription	Gastric	stomach
13	chr19:44508200-44511000	Weak transcription	Left Ventricle	heart
14	chr19:44508200-44511000	Weak transcription	Ovary	ovary
15	chr19:44508200-44511200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr19:44508200-44511200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr19:44508200-44511400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr19:44508200-44511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr19:44508200-44511600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr19:44508200-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr19:44508200-44511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr19:44508200-44511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:44508200-44511800	Weak transcription	Stomach Mucosa	stomach
24	chr19:44508200-44512000	Weak transcription	HSMM	muscle
25	chr19:44508200-44512800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:44508400-44509800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr19:44508400-44509800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:44508400-44510000	Weak transcription	Primary T cells from cord blood	blood
29	chr19:44508400-44510000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr19:44508400-44510000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr19:44508400-44510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr19:44508400-44510000	Weak transcription	Adipose Nuclei	Adipose
33	chr19:44508400-44510200	Weak transcription	Primary B cells from cord blood	blood
34	chr19:44508400-44510200	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr19:44508400-44510200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr19:44508400-44510200	Weak transcription	GM12878-XiMat	blood
37	chr19:44508400-44510400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr19:44508400-44510400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:44508400-44510400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr19:44508400-44510600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:44508400-44510600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr19:44508400-44510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr19:44508400-44510600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:44508400-44510600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr19:44508400-44510600	Weak transcription	A549	lung
46	chr19:44508400-44510800	Weak transcription	Primary hematopoietic stem cells	blood
47	chr19:44508400-44510800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr19:44508400-44510800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr19:44508400-44510800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr19:44508400-44510800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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