Variant report

Variant	rs10406603
Chromosome Location	chr19:51580500-51580501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58876874	1.00[AMR][1000 genomes]
rs59010718	1.00[AMR][1000 genomes]
rs60289400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34104	chr19:51566170-51641675	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51574200-51582600	Weak transcription	Pancreas	Pancrea
2	chr19:51579600-51580600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr19:51579600-51580600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:51579800-51580600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr19:51580000-51582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:51580000-51587800	Weak transcription	Right Atrium	heart
7	chr19:51580200-51582800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr19:51580400-51582600	Weak transcription	Esophagus	oesophagus
9	chr19:51580400-51583000	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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