Variant report

Variant	rs10406829
Chromosome Location	chr19:35816399-35816400
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10423648	1.00[MEX][hapmap]
rs16970196	1.00[MEX][hapmap]
rs16970204	1.00[MEX][hapmap]
rs16970264	1.00[MEX][hapmap]
rs3088063	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35810400-35835200	Weak transcription	Fetal Lung	lung
2	chr19:35810600-35817000	Weak transcription	HepG2	liver
3	chr19:35811600-35832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr19:35811800-35817600	Weak transcription	Ovary	ovary
5	chr19:35812000-35817600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:35812000-35817800	Weak transcription	Brain Substantia Nigra	brain
7	chr19:35812000-35819600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr19:35812000-35820000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr19:35812200-35817400	Weak transcription	Brain Hippocampus Middle	brain
10	chr19:35812200-35819400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr19:35813400-35819800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr19:35814600-35819600	Enhancers	Primary B cells from cord blood	blood
13	chr19:35815400-35818600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr19:35815400-35819600	Enhancers	Primary B cells from peripheral blood	blood
15	chr19:35815400-35819800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr19:35815600-35819600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr19:35815800-35818400	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr19:35816000-35816800	Enhancers	GM12878-XiMat	blood
19	chr19:35816200-35818400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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