Variant report

Variant	rs10407156
Chromosome Location	chr19:38716034-38716035
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:38715980-38716130	AG09319	gingival:	n/a	n/a
2	CTCF	chr19:38715980-38716130	HUVEC	blood vessel:	n/a	n/a
3	CTCF	chr19:38716020-38716170	WI-38	lung:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:38713590..38716581-chr19:38810078..38812613,2	MCF-7	breast:
2	chr19:38711690..38716111-chr19:38864242..38867673,4	MCF-7	breast:
3	chr19:38715204..38718579-chr19:38826351..38828588,3	K562	blood:
4	chr19:38715242..38718088-chr19:38941035..38943575,2	K562	blood:
5	chr19:38713237..38716742-chr19:38865084..38866886,4	MCF-7	breast:
6	chr19:38714374..38716736-chr19:38753965..38756092,2	MCF-7	breast:
7	chr19:38709001..38712807-chr19:38713403..38716348,3	K562	blood:
8	chr19:38715608..38719883-chr19:38825304..38828918,6	K562	blood:
9	chr19:38715033..38716998-chr19:38741502..38743244,2	K562	blood:
10	chr19:38701793..38708887-chr19:38709877..38716652,10	K562	blood:
11	chr19:38604586..38606112-chr19:38715121..38717021,2	K562	blood:
12	chr19:38673271..38675565-chr19:38714868..38716918,2	K562	blood:

No data

Variant related genes	Relation type
DPF1	TF binding region
ENSG00000099341	Chromatin interaction
ENSG00000099338	Chromatin interaction
ENSG00000167642	Chromatin interaction
ENSG00000011332	Chromatin interaction
ENSG00000269653	Chromatin interaction
ENSG00000099337	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34121040	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4802291	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66666015	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8100697	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv833821	chr19:38629937-38756792	Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv911657	chr19:38655449-38753786	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38715200-38718200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:38715200-38719000	Weak transcription	Right Atrium	heart
3	chr19:38715200-38719200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr19:38715200-38719200	Weak transcription	Pancreas	Pancrea
5	chr19:38715400-38716200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr19:38715400-38716600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr19:38715400-38716600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr19:38715400-38716600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:38715400-38717000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:38715400-38717000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr19:38715400-38717000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr19:38715400-38717000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr19:38715400-38717200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:38715400-38717200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:38715400-38717200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr19:38715400-38717200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:38715400-38717200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr19:38715400-38717200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr19:38715400-38718200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr19:38715400-38718200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:38715400-38718400	Weak transcription	Brain Angular Gyrus	brain
22	chr19:38715400-38718400	Weak transcription	Fetal Heart	heart
23	chr19:38715400-38718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:38715400-38719000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:38715400-38719200	Weak transcription	NH-A	brain
26	chr19:38715400-38719200	Weak transcription	NHDF-Ad	bronchial
27	chr19:38715600-38716600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr19:38715600-38716600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr19:38715600-38716600	Enhancers	Brain Germinal Matrix	brain
30	chr19:38715600-38716600	Weak transcription	A549	lung
31	chr19:38715600-38716800	Weak transcription	Fetal Brain Male	brain
32	chr19:38715600-38717000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr19:38715600-38717000	Enhancers	Fetal Brain Female	brain
34	chr19:38715600-38718000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr19:38715600-38718000	Weak transcription	NHEK	skin
36	chr19:38715600-38719400	Weak transcription	Brain Anterior Caudate	brain
37	chr19:38715600-38719600	Weak transcription	Hela-S3	cervix
38	chr19:38716000-38717600	Bivalent Enhancer	Primary B cells from peripheral blood	blood

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