Variant report

Variant	rs10407688
Chromosome Location	chr19:41956828-41956829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10402268	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10409361	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10414933	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10415806	1.00[ASN][1000 genomes]
rs10419737	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11083622	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11083623	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11083624	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2098106	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109233	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2316973	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7247630	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7253614	0.90[ASN][1000 genomes]
rs8101560	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8101740	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8102586	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41948000-41957200	Weak transcription	Esophagus	oesophagus
2	chr19:41953400-41958600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:41955600-41960000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr19:41955600-41962600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr19:41955800-41959400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr19:41955800-41960000	Weak transcription	HUVEC	blood vessel
7	chr19:41955800-41961200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr19:41955800-41962200	Weak transcription	Fetal Intestine Small	intestine
9	chr19:41955800-41962400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr19:41955800-41962400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:41955800-41963000	Weak transcription	Fetal Intestine Large	intestine
12	chr19:41956000-41958400	Weak transcription	Spleen	Spleen
13	chr19:41956000-41961600	Weak transcription	Left Ventricle	heart
14	chr19:41956200-41959600	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links