Variant report
| Variant | rs10408247 |
|---|---|
| Chromosome Location | chr19:45029208-45029209 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:9)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:9 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 2 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 3 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 4 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 5 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 6 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 7 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 8 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| 9 | lnc-ZNF180-1 | chr19:45029134-45029277 | ENSG00000176395 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:6)
| rs_ID | r2[population] |
|---|---|
| rs10409769 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.85[MEX][hapmap];0.85[TSI][hapmap] |
| rs10414398 | 0.90[CEU][hapmap];0.89[GIH][hapmap] |
| rs16959168 | 1.00[CEU][hapmap];0.85[GIH][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1881042 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.96[GIH][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap] |
| rs4547448 | 0.88[YRI][hapmap] |
| rs55903102 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1061350 | chr19:44869075-45035469 | Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10408247 | BCL2L12 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
