Variant report

Variant	rs10410398
Chromosome Location	chr19:39079340-39079341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2080987	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2098658	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28437841	0.91[ASN][1000 genomes]
rs35458693	0.81[ASN][1000 genomes]
rs6508809	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063471	chr19:38734744-39148392	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases
2	nsv470140	chr19:38840139-39119494	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv911663	chr19:38899548-39101879	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv833824	chr19:38914618-39084758	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv911665	chr19:38924814-39101879	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv833826	chr19:38945106-39184547	Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv833827	chr19:38993054-39184547	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38985200-39081800	Weak transcription	Psoas Muscle	Psoas
2	chr19:39053200-39086800	Weak transcription	Brain Angular Gyrus	brain
3	chr19:39053200-39086800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:39056400-39086400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr19:39057200-39085200	Strong transcription	Fetal Muscle Leg	muscle
6	chr19:39058400-39081800	Weak transcription	Adipose Nuclei	Adipose
7	chr19:39064200-39086400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr19:39067000-39086600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:39068200-39079400	Strong transcription	Fetal Muscle Trunk	muscle
10	chr19:39069200-39079800	Strong transcription	Skeletal Muscle Male	skeletal muscle
11	chr19:39069800-39081800	Strong transcription	Skeletal Muscle Female	skeletal muscle
12	chr19:39070600-39082600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr19:39070600-39083800	Weak transcription	Placenta	Placenta
14	chr19:39070600-39086200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr19:39070600-39100000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr19:39071200-39086000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr19:39072200-39082000	Strong transcription	HSMMtube	muscle
18	chr19:39074600-39082600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr19:39074800-39087000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr19:39074800-39101600	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr19:39075400-39087000	Weak transcription	Colonic Mucosa	Colon
22	chr19:39076600-39083800	Weak transcription	Dnd41	blood
23	chr19:39076600-39089600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr19:39076600-39093200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr19:39076800-39081400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr19:39076800-39092800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr19:39077000-39086000	Weak transcription	Fetal Stomach	stomach
28	chr19:39077000-39086200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:39077000-39101600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr19:39077200-39083400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr19:39077200-39103200	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr19:39077400-39082800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr19:39077400-39086400	Weak transcription	Esophagus	oesophagus
34	chr19:39077600-39085800	Weak transcription	Fetal Intestine Small	intestine
35	chr19:39077800-39093000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr19:39078000-39088400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr19:39078000-39089000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr19:39078000-39089200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr19:39078000-39089800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:39078200-39080800	Strong transcription	Primary T cells from cord blood	blood
41	chr19:39078200-39084400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr19:39078200-39092200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr19:39078600-39080800	Weak transcription	Brain Substantia Nigra	brain
44	chr19:39078600-39086200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr19:39078600-39086800	Weak transcription	Brain Hippocampus Middle	brain
46	chr19:39078800-39081400	Weak transcription	Primary B cells from cord blood	blood
47	chr19:39078800-39081400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr19:39078800-39084800	Weak transcription	Fetal Thymus	thymus
49	chr19:39078800-39086200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr19:39078800-39086400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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