Variant report

Variant	rs10410931
Chromosome Location	chr19:44104868-44104869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:44104838-44105007	K562	blood:	n/a	n/a
2	POLR2A	chr19:44104760-44104929	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr19:44098671..44105555-chr19:44121892..44125342,15	MCF-7	breast:
2	chr19:44098885..44105672-chr19:44139703..44145307,6	MCF-7	breast:
3	chr19:44099419..44102216-chr19:44103629..44105771,4	MCF-7	breast:

Variant related genes	Relation type
IRGQ	TF binding region
ENSG00000124444	Chromatin interaction
ENSG00000167378	Chromatin interaction
ENSG00000131116	Chromatin interaction
ENSG00000226763	Chromatin interaction
ENSG00000105767	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10403862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10404317	1.00[AMR][1000 genomes]
rs10408803	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10419957	1.00[AMR][1000 genomes]
rs10424087	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10424446	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3213238	1.00[AMR][1000 genomes]
rs3213304	1.00[AMR][1000 genomes]
rs3213320	1.00[AMR][1000 genomes]
rs3213324	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532821	chr19:43842383-44357315	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv833839	chr19:44099813-44272299	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44101600-44112000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:44101800-44109400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:44101800-44111600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:44101800-44123200	Weak transcription	Small Intestine	intestine
5	chr19:44102000-44122600	Weak transcription	Fetal Kidney	kidney
6	chr19:44102200-44111000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr19:44102200-44111200	Strong transcription	Fetal Muscle Leg	muscle
8	chr19:44102200-44113600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr19:44102200-44114200	Weak transcription	NH-A	brain
10	chr19:44102200-44114600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr19:44102200-44122600	Weak transcription	Psoas Muscle	Psoas
12	chr19:44102400-44105000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr19:44102400-44105400	Weak transcription	Fetal Heart	heart
14	chr19:44102400-44106000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr19:44102400-44106200	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr19:44102400-44107200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr19:44102400-44107400	Strong transcription	Primary T cells from cord blood	blood
18	chr19:44102400-44107400	Strong transcription	Placenta	Placenta
19	chr19:44102400-44109600	Weak transcription	Fetal Brain Male	brain
20	chr19:44102400-44110800	Weak transcription	Colon Smooth Muscle	Colon
21	chr19:44102400-44119600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr19:44102400-44122600	Weak transcription	NHDF-Ad	bronchial
23	chr19:44102600-44105200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr19:44102600-44105400	Weak transcription	Primary B cells from cord blood	blood
25	chr19:44102600-44105800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr19:44102600-44105800	Strong transcription	Brain Germinal Matrix	brain
27	chr19:44102600-44106000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr19:44102600-44106000	Strong transcription	Fetal Lung	lung
29	chr19:44102600-44106600	Weak transcription	HSMMtube	muscle
30	chr19:44102600-44106800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr19:44102600-44106800	Strong transcription	Fetal Intestine Small	intestine
32	chr19:44102600-44106800	Weak transcription	Stomach Mucosa	stomach
33	chr19:44102600-44107000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr19:44102600-44107200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr19:44102600-44107200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr19:44102600-44107200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr19:44102600-44107200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:44102600-44107200	Strong transcription	Left Ventricle	heart
39	chr19:44102600-44107200	Strong transcription	Lung	lung
40	chr19:44102600-44107400	Strong transcription	Fetal Intestine Large	intestine
41	chr19:44102600-44107400	Strong transcription	Fetal Thymus	thymus
42	chr19:44102600-44108000	Strong transcription	Thymus	Thymus
43	chr19:44102600-44108200	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr19:44102600-44109800	Strong transcription	Fetal Muscle Trunk	muscle
45	chr19:44102600-44115800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr19:44102600-44116200	Weak transcription	Hela-S3	cervix
47	chr19:44102600-44120600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr19:44102600-44121200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr19:44102600-44122600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr19:44102600-44122600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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