Variant report

Variant	rs10411387
Chromosome Location	chr19:19549707-19549708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:19488930..19490587-chr19:19548846..19551529,2	K562	blood:
2	chr19:19543861..19547049-chr19:19547562..19550804,4	MCF-7	breast:
3	chr19:19523469..19525649-chr19:19548128..19551006,2	K562	blood:

Variant related genes	Relation type
ENSG00000207821	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10426732	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12976826	1.00[ASW][hapmap]
rs16994684	1.00[ASW][hapmap]
rs28539064	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341634	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60327356	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7258488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922845	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922866	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73922902	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73924828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19518600-19549800	Weak transcription	Fetal Brain Female	brain
2	chr19:19522200-19563400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr19:19537800-19549800	Weak transcription	A549	lung
4	chr19:19538200-19554800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr19:19538400-19555000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr19:19538400-19555200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr19:19538400-19555800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr19:19538400-19556800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr19:19538400-19556800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr19:19539800-19555000	Weak transcription	Stomach Mucosa	stomach
11	chr19:19540200-19555400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:19540200-19562600	Weak transcription	Fetal Intestine Large	intestine
13	chr19:19543400-19550800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:19544000-19551000	Strong transcription	Dnd41	blood
15	chr19:19544200-19555800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr19:19544400-19563400	Weak transcription	Fetal Kidney	kidney
17	chr19:19544600-19550400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr19:19545000-19550400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr19:19545200-19550400	Genic enhancers	Primary T cells fromperipheralblood	blood
20	chr19:19545200-19550400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr19:19545400-19550200	Strong transcription	Fetal Thymus	thymus
22	chr19:19545400-19552200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:19545400-19556000	Strong transcription	Fetal Intestine Small	intestine
24	chr19:19545400-19562200	Weak transcription	Brain Angular Gyrus	brain
25	chr19:19545600-19553800	Weak transcription	Placenta	Placenta
26	chr19:19545600-19554800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr19:19545600-19568600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr19:19545800-19549800	Weak transcription	HMEC	breast
29	chr19:19545800-19553400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr19:19545800-19554600	Weak transcription	HUVEC	blood vessel
31	chr19:19545800-19555200	Weak transcription	Aorta	Aorta
32	chr19:19545800-19555400	Weak transcription	Osteobl	bone
33	chr19:19545800-19558200	Weak transcription	Fetal Lung	lung
34	chr19:19545800-19558400	Weak transcription	HSMMtube	muscle
35	chr19:19545800-19563400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr19:19545800-19568600	Weak transcription	Brain Substantia Nigra	brain
37	chr19:19545800-19570600	Weak transcription	Brain Cingulate Gyrus	brain
38	chr19:19546000-19553600	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr19:19546000-19555000	Weak transcription	Adipose Nuclei	Adipose
40	chr19:19546000-19555800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr19:19546000-19558200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr19:19546000-19558600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr19:19546000-19566600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr19:19546200-19554000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr19:19546200-19555200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr19:19546200-19555400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:19546200-19569000	Weak transcription	Colon Smooth Muscle	Colon
48	chr19:19546600-19550000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
49	chr19:19546800-19550200	Strong transcription	Thymus	Thymus
50	chr19:19546800-19550400	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links