Variant report

Variant	rs10412033
Chromosome Location	chr19:55936376-55936377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1457109	0.81[ASN][1000 genomes]
rs2303089	1.00[TSI][hapmap]
rs2384684	0.81[CHD][hapmap]
rs4075908	0.81[CHD][hapmap]
rs4801608	0.81[CHD][hapmap]
rs7247719	0.93[MEX][hapmap];0.83[TSI][hapmap]
rs7249831	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7253234	0.93[MEX][hapmap];1.00[TSI][hapmap]
rs73606257	1.00[ASN][1000 genomes]
rs73606265	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73606267	0.88[EUR][1000 genomes]
rs8107678	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
2	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
3	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
4	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	nsv912477	chr19:55936376-55972950	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv912478	chr19:55936376-56045522	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55931600-55937800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr19:55933000-55940200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:55934800-55936800	Enhancers	Brain Hippocampus Middle	brain
4	chr19:55934800-55937000	Enhancers	Brain Anterior Caudate	brain
5	chr19:55935000-55936800	Enhancers	Brain Substantia Nigra	brain
6	chr19:55935400-55936600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr19:55935400-55937600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr19:55935800-55936400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:55936000-55937600	Enhancers	Brain Cingulate Gyrus	brain
10	chr19:55936200-55936400	Enhancers	Brain Angular Gyrus	brain
11	chr19:55936200-55936400	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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