Variant report

Variant	rs10412351
Chromosome Location	chr19:19604562-19604563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:19438751..19440624-chr19:19603329..19605522,2	K562	blood:
2	chr19:19604245..19607046-chr19:19609002..19611869,2	K562	blood:
3	chr19:19602336..19605055-chr19:19620570..19622403,2	MCF-7	breast:
4	chr19:19604449..19607288-chr19:19625102..19626994,2	K562	blood:
5	chr19:19603656..19606213-chr19:19607284..19608859,2	K562	blood:
6	chr19:19602973..19607408-chr19:19609370..19612569,7	K562	blood:
7	chr19:19602828..19604988-chr19:19663749..19665347,2	MCF-7	breast:
8	chr19:19601950..19605633-chr19:19625984..19629192,3	K562	blood:
9	chr19:19496166..19498760-chr19:19603393..19605567,3	MCF-7	breast:
10	chr19:19599544..19602338-chr19:19603143..19607030,3	K562	blood:
11	chr19:19604081..19605986-chr19:19620556..19622809,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167491	Chromatin interaction
ENSG00000258674	Chromatin interaction
ENSG00000186010	Chromatin interaction
ENSG00000178093	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10401822	0.84[AFR][1000 genomes]
rs10405475	1.00[AFR][1000 genomes]
rs10416335	0.83[AFR][1000 genomes]
rs10421166	1.00[AFR][1000 genomes]
rs10425164	0.89[AFR][1000 genomes]
rs16996102	0.89[AFR][1000 genomes]
rs55927831	1.00[AFR][1000 genomes]
rs59344441	0.89[AFR][1000 genomes]
rs73922887	0.83[AFR][1000 genomes]
rs73922890	0.94[AFR][1000 genomes]
rs73922895	1.00[AFR][1000 genomes]
rs73922896	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911305	chr19:19303802-19663850	Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19599000-19618000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr19:19600800-19619400	Strong transcription	Dnd41	blood
3	chr19:19601000-19606800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr19:19601000-19624600	Weak transcription	Fetal Brain Male	brain
5	chr19:19601200-19604800	Weak transcription	HSMMtube	muscle
6	chr19:19601200-19605200	Weak transcription	Aorta	Aorta
7	chr19:19601200-19624800	Weak transcription	Fetal Kidney	kidney
8	chr19:19601200-19624800	Weak transcription	Right Atrium	heart
9	chr19:19601400-19604800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr19:19601400-19604800	Weak transcription	Brain Hippocampus Middle	brain
11	chr19:19601400-19604800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr19:19601400-19604800	Weak transcription	Hela-S3	cervix
13	chr19:19601400-19605000	Weak transcription	Brain Anterior Caudate	brain
14	chr19:19601400-19605200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr19:19601400-19605200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:19601400-19605200	Weak transcription	Brain Substantia Nigra	brain
17	chr19:19601400-19605200	Weak transcription	Stomach Mucosa	stomach
18	chr19:19601400-19609200	Weak transcription	Psoas Muscle	Psoas
19	chr19:19601400-19611800	Strong transcription	K562	blood
20	chr19:19601400-19612200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr19:19601400-19615200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr19:19601400-19619400	Strong transcription	Fetal Intestine Small	intestine
23	chr19:19601400-19624800	Weak transcription	Fetal Heart	heart
24	chr19:19601600-19604600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr19:19601600-19604600	Weak transcription	Colon Smooth Muscle	Colon
26	chr19:19601600-19606600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:19601600-19607400	Strong transcription	A549	lung
28	chr19:19601600-19608200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr19:19601600-19613400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr19:19601600-19619200	Strong transcription	Fetal Thymus	thymus
31	chr19:19601600-19619400	Strong transcription	Primary T cells from cord blood	blood
32	chr19:19601600-19619400	Strong transcription	Duodenum Mucosa	Duodenum
33	chr19:19601600-19619400	Strong transcription	Thymus	Thymus
34	chr19:19601600-19620000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr19:19601800-19604800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr19:19601800-19605200	Strong transcription	Primary hematopoietic stem cells	blood
37	chr19:19601800-19606600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:19601800-19613800	Strong transcription	NHEK	skin
39	chr19:19601800-19616200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr19:19601800-19618000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
41	chr19:19601800-19618200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr19:19601800-19618400	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr19:19601800-19618800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr19:19601800-19618800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr19:19601800-19619200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr19:19601800-19619200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr19:19601800-19619200	Strong transcription	Fetal Intestine Large	intestine
48	chr19:19601800-19619200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr19:19601800-19619200	Strong transcription	Spleen	Spleen
50	chr19:19601800-19619400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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