Variant report

Variant	rs10413356
Chromosome Location	chr19:51861346-51861347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:51842358..51844752-chr19:51861235..51862876,2	MCF-7	breast:
2	chr19:51859965..51862618-chr19:51891276..51893885,2	K562	blood:
3	chr19:51861247..51863236-chr19:51869920..51872324,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269403	Chromatin interaction
ENSG00000186806	Chromatin interaction
ENSG00000267905	Chromatin interaction
ENSG00000160318	Chromatin interaction
ENSG00000262874	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv1813225	chr19:51821612-51888813	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv912294	chr19:51844978-51878841	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	esv3336214	chr19:51858913-51861611	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51844000-51865800	Weak transcription	Small Intestine	intestine
2	chr19:51844000-51866400	Weak transcription	Right Atrium	heart
3	chr19:51847200-51868600	Weak transcription	Fetal Lung	lung
4	chr19:51849000-51862400	Weak transcription	NHDF-Ad	bronchial
5	chr19:51850600-51862400	Weak transcription	NHEK	skin
6	chr19:51851000-51861600	Weak transcription	Primary B cells from cord blood	blood
7	chr19:51852400-51865200	Weak transcription	Fetal Heart	heart
8	chr19:51853600-51868600	Weak transcription	Aorta	Aorta
9	chr19:51853800-51868600	Weak transcription	HSMM	muscle
10	chr19:51854400-51862800	Weak transcription	HMEC	breast
11	chr19:51854600-51867800	Weak transcription	Psoas Muscle	Psoas
12	chr19:51854800-51862200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr19:51855200-51866000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr19:51855400-51867600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr19:51855600-51865400	Weak transcription	GM12878-XiMat	blood
16	chr19:51856400-51862200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr19:51856400-51862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:51856400-51862400	Weak transcription	Placenta	Placenta
19	chr19:51856400-51865200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:51856400-51866000	Weak transcription	Lung	lung
21	chr19:51856600-51862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:51856600-51862200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr19:51856600-51862200	Weak transcription	Osteobl	bone
24	chr19:51856600-51862600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr19:51856600-51865600	Weak transcription	Colonic Mucosa	Colon
26	chr19:51856600-51866000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr19:51856600-51866000	Weak transcription	Gastric	stomach
28	chr19:51856600-51867000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr19:51856600-51868600	Weak transcription	Ovary	ovary
30	chr19:51856800-51866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr19:51857800-51865600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:51857800-51865600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr19:51857800-51865800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr19:51857800-51865800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr19:51857800-51865800	Weak transcription	NHLF	lung
36	chr19:51857800-51866000	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr19:51857800-51866000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr19:51857800-51866000	Weak transcription	Spleen	Spleen
39	chr19:51857800-51867600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr19:51857800-51868400	Weak transcription	Primary hematopoietic stem cells	blood
41	chr19:51858000-51861800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr19:51858000-51862800	Weak transcription	NH-A	brain
43	chr19:51858000-51865200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr19:51858000-51865800	Weak transcription	Colon Smooth Muscle	Colon
45	chr19:51858200-51861400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr19:51858200-51862200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr19:51858200-51862800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr19:51858200-51865200	Weak transcription	Primary T cells fromperipheralblood	blood
49	chr19:51858200-51865600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr19:51858200-51865800	Weak transcription	Rectal Mucosa Donor 29	rectum

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