Variant report

Variant	rs10414246
Chromosome Location	chr19:40661804-40661805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40661269..40662213-chr19:40727546..40728443,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58348431	0.87[AMR][1000 genomes]
rs8111518	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv3336591	chr19:40647161-40670363	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40654200-40673400	Weak transcription	Right Atrium	heart
2	chr19:40659600-40667400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:40659600-40667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:40661000-40663800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:40661000-40667400	Weak transcription	Primary B cells from cord blood	blood
6	chr19:40661200-40662000	Enhancers	Primary B cells from peripheral blood	blood
7	chr19:40661600-40662000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr19:40661600-40662000	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr19:40661600-40662000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr19:40661600-40662000	Flanking Active TSS	A549	lung
11	chr19:40661600-40662000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr19:40661600-40662200	Enhancers	GM12878-XiMat	blood
13	chr19:40661600-40662400	Enhancers	Fetal Brain Male	brain
14	chr19:40661600-40662600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr19:40661600-40663200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr19:40661600-40663400	Enhancers	Primary T cells fromperipheralblood	blood
17	chr19:40661800-40662000	Flanking Active TSS	Hela-S3	cervix
18	chr19:40661800-40662000	Active TSS	K562	blood
19	chr19:40661800-40662200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr19:40661800-40662200	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links