Variant report

Variant	rs10417226
Chromosome Location	chr19:18048149-18048150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:18042431..18045410-chr19:18045848..18049178,4	K562	blood:
2	chr19:18047468..18050720-chr19:18106385..18110361,4	MCF-7	breast:
3	chr19:18042658..18044905-chr19:18047666..18051098,3	MCF-7	breast:
4	chr19:18042431..18046100-chr19:18046248..18049322,5	K562	blood:
5	chr19:18047667..18050834-chr19:18110396..18113328,4	MCF-7	breast:
6	chr19:18047172..18050711-chr19:18106361..18109351,5	K562	blood:
7	chr19:18047804..18050827-chr19:18051646..18053620,5	K562	blood:
8	chr19:17976232..17986474-chr19:18040915..18051076,38	MCF-7	breast:
9	chr19:18047281..18049831-chr19:18109930..18111529,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000007080	Chromatin interaction
ENSG00000105641	Chromatin interaction
ENSG00000105643	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6512237	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7250332	0.81[AFR][1000 genomes]
rs7256003	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8099927	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs8110033	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911214	chr19:17827442-18123965	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv1055932	chr19:17923918-18369944	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
3	nsv543923	chr19:17923918-18369944	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv833772	chr19:17965173-18139337	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	75 gene(s)	inside rSNPs	diseases
5	nsv911226	chr19:18007077-18075077	Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv911227	chr19:18007077-18117646	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
7	nsv532614	chr19:18033043-18573963	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	204 gene(s)	inside rSNPs	diseases
8	nsv911228	chr19:18038782-18101830	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv911229	chr19:18042945-18117646	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	nsv470130	chr19:18047283-18234587	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18044600-18051000	Weak transcription	Aorta	Aorta
2	chr19:18044600-18058200	Weak transcription	Psoas Muscle	Psoas
3	chr19:18044800-18048200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr19:18044800-18049000	Weak transcription	NHLF	lung
5	chr19:18044800-18050200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr19:18044800-18050800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr19:18044800-18051000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr19:18044800-18052000	Weak transcription	Esophagus	oesophagus
9	chr19:18044800-18052400	Weak transcription	Colonic Mucosa	Colon
10	chr19:18044800-18052800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr19:18044800-18053200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr19:18044800-18053400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr19:18044800-18054400	Weak transcription	Right Atrium	heart
14	chr19:18044800-18054400	Weak transcription	A549	lung
15	chr19:18044800-18054400	Weak transcription	NH-A	brain
16	chr19:18044800-18055000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr19:18044800-18055000	Weak transcription	HSMMtube	muscle
18	chr19:18044800-18057000	Weak transcription	Primary B cells from cord blood	blood
19	chr19:18044800-18057800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr19:18044800-18057800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr19:18044800-18058000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:18044800-18058000	Weak transcription	Fetal Brain Male	brain
23	chr19:18044800-18058000	Weak transcription	Fetal Kidney	kidney
24	chr19:18044800-18058000	Weak transcription	Small Intestine	intestine
25	chr19:18044800-18058200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr19:18045000-18048200	Weak transcription	Colon Smooth Muscle	Colon
27	chr19:18045000-18048800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr19:18045000-18048800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr19:18045000-18049000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr19:18045000-18049000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr19:18045000-18049000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr19:18045000-18049400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr19:18045000-18050600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr19:18045000-18051000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr19:18045000-18052400	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr19:18045000-18052400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr19:18045000-18052400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr19:18045000-18052400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr19:18045000-18052400	Weak transcription	K562	blood
40	chr19:18045000-18052600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr19:18045000-18053200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr19:18045000-18054400	Weak transcription	HUVEC	blood vessel
43	chr19:18045000-18055000	Weak transcription	Osteobl	bone
44	chr19:18045000-18057800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr19:18045000-18057800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr19:18045000-18058000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr19:18045000-18058000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:18045000-18058000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr19:18045000-18058000	Weak transcription	Fetal Heart	heart
50	chr19:18045000-18058000	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links