Variant report

Variant	rs10417785
Chromosome Location	chr19:55942456-55942457
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:55934645..55937575-chr19:55940137..55944163,4	K562	blood:
2	chr19:55917961..55920276-chr19:55940562..55944093,4	K562	blood:
3	chr19:55915970..55920672-chr19:55938294..55944595,9	K562	blood:
4	chr19:55917487..55920420-chr19:55941767..55946909,5	MCF-7	breast:
5	chr19:55942273..55945441-chr19:55953460..55955338,3	K562	blood:
6	chr19:55911306..55913979-chr19:55941280..55943046,2	K562	blood:
7	chr19:55941660..55944009-chr19:55947718..55950362,2	MCF-7	breast:
8	chr19:55934305..55936521-chr19:55941153..55942887,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10403564	1.00[MEX][hapmap]
rs10408088	1.00[MEX][hapmap]
rs10410269	1.00[MEX][hapmap]
rs10411984	0.86[ASW][hapmap]
rs7259701	1.00[MEX][hapmap]
rs73606258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912457	chr19:55725410-56019597	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	228 gene(s)	inside rSNPs	diseases
2	nsv432086	chr19:55807586-56050844	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	220 gene(s)	inside rSNPs	diseases
3	nsv912463	chr19:55845386-56004901	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	219 gene(s)	inside rSNPs	diseases
4	nsv912473	chr19:55874642-56145428	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
5	nsv912477	chr19:55936376-55972950	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	nsv912478	chr19:55936376-56045522	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
7	nsv828640	chr19:55941819-55942960	Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv828641	chr19:55941819-55943169	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv912479	chr19:55942456-55969746	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:55941200-55944400	Strong transcription	Brain Hippocampus Middle	brain
2	chr19:55941200-55953400	Weak transcription	Right Atrium	heart
3	chr19:55941400-55944600	Strong transcription	Brain Inferior Temporal Lobe	brain
4	chr19:55941600-55942800	Strong transcription	Fetal Brain Female	brain
5	chr19:55941600-55944200	Strong transcription	Brain Angular Gyrus	brain
6	chr19:55941600-55946800	Strong transcription	Brain Cingulate Gyrus	brain
7	chr19:55941800-55943200	Strong transcription	Brain Substantia Nigra	brain
8	chr19:55941800-55943400	ZNF genes & repeats	Brain Germinal Matrix	brain
9	chr19:55941800-55943600	Strong transcription	Brain Anterior Caudate	brain
10	chr19:55942200-55943800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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