Variant report

Variant	rs10418551
Chromosome Location	chr19:51837332-51837333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51823906..51826504-chr19:51835874..51838543,3	MCF-7	breast:
2	chr19:51835272..51839156-chr19:51839989..51844712,7	K562	blood:

Variant related genes	Relation type
ENSG00000186806	Chromatin interaction
ENSG00000267905	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1035454	0.81[ASN][1000 genomes]
rs4802783	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv1813225	chr19:51821612-51888813	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51831000-51841200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:51831400-51841800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr19:51831600-51841800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr19:51832200-51841600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:51832400-51841800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr19:51833000-51842000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr19:51833600-51842000	Weak transcription	Brain Substantia Nigra	brain
8	chr19:51834200-51842200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:51834400-51841800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr19:51834600-51841800	Weak transcription	Fetal Intestine Large	intestine
11	chr19:51834800-51837400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:51834800-51838200	Weak transcription	Brain Germinal Matrix	brain
13	chr19:51834800-51841400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr19:51834800-51841800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr19:51834800-51842000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr19:51834800-51842200	Weak transcription	Gastric	stomach
17	chr19:51834800-51842200	Weak transcription	Pancreas	Pancrea
18	chr19:51835000-51837600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr19:51835000-51841800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:51835000-51841800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr19:51835000-51841800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr19:51835000-51842200	Weak transcription	Left Ventricle	heart
23	chr19:51835600-51841200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr19:51835600-51841800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr19:51835600-51841800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr19:51835600-51841800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr19:51835800-51841800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:51835800-51841800	Weak transcription	Liver	Liver
29	chr19:51835800-51841800	Weak transcription	Fetal Intestine Small	intestine
30	chr19:51835800-51842200	Weak transcription	Aorta	Aorta
31	chr19:51836000-51837400	Weak transcription	Esophagus	oesophagus
32	chr19:51836000-51841000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr19:51836000-51841800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr19:51836000-51842000	Weak transcription	Brain Hippocampus Middle	brain
35	chr19:51836000-51842000	Weak transcription	Ovary	ovary
36	chr19:51836200-51842000	Weak transcription	HepG2	liver
37	chr19:51836600-51841600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:51836800-51837400	Strong transcription	Fetal Stomach	stomach
39	chr19:51837000-51837600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr19:51837000-51837600	Strong transcription	A549	lung
41	chr19:51837200-51837600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr19:51837200-51837600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr19:51837200-51837600	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links