Variant report

Variant	rs10418749
Chromosome Location	chr19:44511114-44511115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44506934..44508722-chr19:44508906..44511281,4	K562	blood:
2	chr19:44438985..44440520-chr19:44510451..44513064,2	MCF-7	breast:
3	chr19:44506929..44508722-chr19:44508906..44512991,6	K562	blood:
4	chr19:44510545..44512229-chr19:44575902..44577637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266921	Chromatin interaction
ENSG00000159882	Chromatin interaction
ENSG00000186026	Chromatin interaction
ENSG00000124459	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8110147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44508000-44511600	Weak transcription	Pancreas	Pancrea
2	chr19:44508200-44511200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr19:44508200-44511200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr19:44508200-44511400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr19:44508200-44511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr19:44508200-44511600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:44508200-44511600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr19:44508200-44511600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:44508200-44511800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:44508200-44511800	Weak transcription	Stomach Mucosa	stomach
11	chr19:44508200-44512000	Weak transcription	HSMM	muscle
12	chr19:44508200-44512800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44508400-44511200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr19:44508400-44511200	Weak transcription	Brain Anterior Caudate	brain
15	chr19:44508400-44511200	Weak transcription	Colonic Mucosa	Colon
16	chr19:44508400-44511200	Weak transcription	HUVEC	blood vessel
17	chr19:44508400-44511400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:44508400-44511400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:44508400-44511400	Weak transcription	Fetal Brain Male	brain
20	chr19:44508400-44511400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr19:44508400-44511400	Weak transcription	Fetal Thymus	thymus
22	chr19:44508400-44511400	Weak transcription	Right Ventricle	heart
23	chr19:44508400-44511400	Weak transcription	NH-A	brain
24	chr19:44508400-44511600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr19:44508400-44511600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:44508400-44511600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr19:44508400-44511600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:44508400-44511600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr19:44508400-44511600	Weak transcription	Fetal Stomach	stomach
30	chr19:44508400-44511600	Weak transcription	HepG2	liver
31	chr19:44508400-44511600	Weak transcription	NHEK	skin
32	chr19:44508400-44511600	Weak transcription	NHLF	lung
33	chr19:44508400-44511800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr19:44508400-44512000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:44508400-44512000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr19:44508400-44512000	Weak transcription	HSMMtube	muscle
37	chr19:44508400-44512200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr19:44508400-44512200	Weak transcription	HMEC	breast
39	chr19:44508400-44512800	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr19:44508400-44513000	Weak transcription	K562	blood
41	chr19:44508400-44513200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr19:44508400-44513600	Weak transcription	Hela-S3	cervix
43	chr19:44508600-44512600	Weak transcription	NHDF-Ad	bronchial
44	chr19:44509200-44520600	ZNF genes & repeats	Liver	Liver
45	chr19:44509400-44516800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
46	chr19:44509400-44518200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr19:44509800-44516600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr19:44509800-44517000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:44509800-44517400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
50	chr19:44510000-44517000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood

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