Variant report

Variant	rs10419538
Chromosome Location	chr19:35824019-35824020
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:35797829..35800128-chr19:35823862..35825668,2	MCF-7	breast:
2	chr19:35801109..35803995-chr19:35823697..35825261,2	K562	blood:

Variant related genes	Relation type
ENSG00000105695	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12327820	0.81[CEU][hapmap];0.84[CHB][hapmap]
rs2239512	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2267574	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2267576	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2267577	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv510765	chr19:35708226-35890668	Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	esv2758497	chr19:35711078-35887113	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
6	esv2758758	chr19:35711078-35887113	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
8	esv1828194	chr19:35812566-35865695	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35810400-35835200	Weak transcription	Fetal Lung	lung
2	chr19:35811600-35832200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr19:35817600-35844000	Weak transcription	Brain Angular Gyrus	brain
4	chr19:35818800-35836600	Weak transcription	Brain Anterior Caudate	brain
5	chr19:35819600-35824600	Strong transcription	Ovary	ovary
6	chr19:35820000-35829000	Strong transcription	Brain Inferior Temporal Lobe	brain
7	chr19:35820400-35827600	Strong transcription	Brain Hippocampus Middle	brain
8	chr19:35820600-35827000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr19:35821000-35825400	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
10	chr19:35822400-35826000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
11	chr19:35822800-35824800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
12	chr19:35823400-35824400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr19:35823400-35824400	Enhancers	Primary hematopoietic stem cells	blood
14	chr19:35823400-35824400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr19:35823400-35824400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr19:35823400-35824400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr19:35823400-35824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:35823400-35824400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr19:35823400-35824600	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr19:35823600-35824200	Enhancers	Primary T cells from cord blood	blood
21	chr19:35823600-35824200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr19:35823600-35824200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
23	chr19:35823600-35824200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
24	chr19:35823600-35824400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr19:35823600-35824400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr19:35823600-35824400	Enhancers	HMEC	breast
27	chr19:35823600-35824600	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr19:35823600-35824600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr19:35823600-35824600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr19:35823600-35825600	Strong transcription	Brain Cingulate Gyrus	brain
31	chr19:35823600-35825600	Strong transcription	Brain Substantia Nigra	brain
32	chr19:35823800-35824200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
33	chr19:35823800-35824400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr19:35823800-35824400	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr19:35823800-35824400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr19:35823800-35824400	Genic enhancers	Spleen	Spleen

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