Variant report

Variant	rs10423289
Chromosome Location	chr19:47548327-47548328
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:47547423..47549920-chr19:47617709..47619921,2	MCF-7	breast:
2	chr19:47546007..47548837-chr19:47551306..47553028,2	K562	blood:
3	chr19:47537595..47541132-chr19:47548303..47552925,5	K562	blood:

Variant related genes	Relation type
ENSG00000130748	Chromatin interaction
ENSG00000130751	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1862499	0.82[CHB][hapmap];0.81[CHD][hapmap]
rs3745615	0.82[CHB][hapmap]
rs7252158	0.82[CHB][hapmap]
rs889171	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346722	chr19:46779000-47555828	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
2	esv3319153	chr19:46779004-47555796	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
3	esv3319154	chr19:46779004-47555796	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
4	esv3397605	chr19:46779033-47555776	Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	183 gene(s)	inside rSNPs	diseases
5	nsv917664	chr19:47482403-48177720	Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	199 gene(s)	inside rSNPs	diseases
6	nsv912192	chr19:47499031-47562123	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
7	nsv912193	chr19:47519134-47562123	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv912194	chr19:47540859-47562123	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv912195	chr19:47540859-47569003	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:47539600-47549200	Weak transcription	Ovary	ovary
2	chr19:47539600-47550400	Weak transcription	Left Ventricle	heart
3	chr19:47539800-47548400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr19:47539800-47548400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:47539800-47548400	Weak transcription	Gastric	stomach
6	chr19:47539800-47548600	Weak transcription	Right Ventricle	heart
7	chr19:47539800-47549400	Weak transcription	Pancreas	Pancrea
8	chr19:47539800-47550200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr19:47539800-47550400	Weak transcription	Primary T cells from cord blood	blood
10	chr19:47539800-47550400	Weak transcription	Liver	Liver
11	chr19:47539800-47550400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr19:47539800-47550400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr19:47539800-47550600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr19:47539800-47550600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:47539800-47550600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr19:47539800-47550600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr19:47539800-47550600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr19:47539800-47550600	Weak transcription	Brain Anterior Caudate	brain
19	chr19:47539800-47550600	Weak transcription	Colon Smooth Muscle	Colon
20	chr19:47539800-47550600	Weak transcription	Right Atrium	heart
21	chr19:47539800-47550600	Weak transcription	NHLF	lung
22	chr19:47539800-47550800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr19:47539800-47551200	Weak transcription	Aorta	Aorta
24	chr19:47540000-47548400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr19:47540000-47549200	Weak transcription	Spleen	Spleen
26	chr19:47540000-47550000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr19:47540000-47550000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr19:47540000-47550200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr19:47540000-47550400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr19:47540000-47550400	Weak transcription	Adipose Nuclei	Adipose
31	chr19:47540000-47550400	Weak transcription	Fetal Muscle Trunk	muscle
32	chr19:47540000-47550400	Weak transcription	Fetal Muscle Leg	muscle
33	chr19:47540000-47550600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr19:47540000-47550600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:47540000-47550600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr19:47540000-47550600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr19:47540000-47550600	Weak transcription	Brain Hippocampus Middle	brain
38	chr19:47540000-47550600	Weak transcription	Fetal Thymus	thymus
39	chr19:47540000-47550800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr19:47540000-47550800	Weak transcription	Small Intestine	intestine
41	chr19:47540200-47549800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr19:47540200-47550000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr19:47540200-47550400	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr19:47540200-47550400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr19:47540200-47550400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr19:47540200-47550400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr19:47540200-47550600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:47540200-47550600	Weak transcription	Colonic Mucosa	Colon
49	chr19:47540200-47550600	Weak transcription	Duodenum Mucosa	Duodenum
50	chr19:47540200-47550600	Weak transcription	HSMMtube	muscle

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