Variant report

Variant	rs10423292
Chromosome Location	chr19:51521078-51521079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:51519972-51521183	HCT-116	colon:	n/a	n/a
2	POLR2A	chr19:51519964-51521125	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51517770..51520731-chr19:51521022..51523368,3	MCF-7	breast:

Variant related genes	Relation type
KLK10	TF binding region
ENSG00000129451	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10423037	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10424744	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7259651	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912291	chr19:51505725-51537682	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51519800-51521400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:51519800-51522000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr19:51519800-51522400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr19:51520000-51521200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr19:51520000-51521200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr19:51520000-51522000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr19:51520000-51522400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr19:51520000-51522400	Active TSS	NHEK	skin
9	chr19:51520000-51522800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
10	chr19:51520000-51523000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr19:51520000-51523000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
12	chr19:51520000-51523400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr19:51520200-51521200	Bivalent Enhancer	Fetal Brain Male	brain
14	chr19:51520200-51521600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
15	chr19:51520200-51522000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr19:51520200-51523000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
17	chr19:51520200-51523400	Active TSS	Ovary	ovary
18	chr19:51520400-51523600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:51520800-51521200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:51520800-51521600	Active TSS	HMEC	breast
21	chr19:51520800-51522000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr19:51520800-51522000	Weak transcription	Pancreas	Pancrea
23	chr19:51520800-51522000	Weak transcription	Right Atrium	heart
24	chr19:51520800-51522200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr19:51520800-51522800	Active TSS	Right Ventricle	heart
26	chr19:51520800-51523400	Active TSS	H9 Cell Line	embryonic stem cell
27	chr19:51521000-51521200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr19:51521000-51522000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr19:51521000-51522400	Weak transcription	Gastric	stomach
30	chr19:51521000-51523200	Active TSS	Esophagus	oesophagus

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