Variant report

Variant	rs10424843
Chromosome Location	chr19:39439907-39439908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:39436715-39441620	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr19:39439903-39440580	HepG2	liver:	n/a	n/a
3	POLR2A	chr19:39428415-39444124	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:39432173-39442255	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:39421083..39425618-chr19:39435632..39441753,7	MCF-7	breast:

Variant related genes	Relation type
FBXO17	TF binding region
ENSG00000104835	Chromatin interaction
ENSG00000128626	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12980086	0.91[EUR][1000 genomes]
rs12982957	0.83[EUR][1000 genomes]
rs12985638	0.81[EUR][1000 genomes]
rs7245863	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057899	chr19:39088319-39475493	Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39422400-39440600	Weak transcription	NHDF-Ad	bronchial
2	chr19:39422600-39440200	Weak transcription	NH-A	brain
3	chr19:39422600-39440600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr19:39422600-39453000	Weak transcription	HSMMtube	muscle
5	chr19:39423200-39440800	Weak transcription	Fetal Heart	heart
6	chr19:39423600-39440400	Weak transcription	Right Atrium	heart
7	chr19:39423600-39440600	Weak transcription	Gastric	stomach
8	chr19:39424400-39440000	Weak transcription	Fetal Brain Female	brain
9	chr19:39424600-39440200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr19:39424600-39440200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr19:39424800-39440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr19:39424800-39440200	Weak transcription	Brain Substantia Nigra	brain
13	chr19:39425400-39440400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr19:39425600-39440200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr19:39425800-39440200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr19:39425800-39440600	Weak transcription	Esophagus	oesophagus
17	chr19:39425800-39440600	Weak transcription	Left Ventricle	heart
18	chr19:39425800-39440600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr19:39425800-39440600	Weak transcription	Right Ventricle	heart
20	chr19:39425800-39440600	Weak transcription	NHEK	skin
21	chr19:39426000-39440200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr19:39426400-39440600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr19:39431400-39440200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr19:39431400-39440600	Weak transcription	HUVEC	blood vessel
25	chr19:39431800-39440200	Strong transcription	Fetal Intestine Small	intestine
26	chr19:39432000-39440200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr19:39432200-39440200	Strong transcription	Fetal Stomach	stomach
28	chr19:39432400-39441800	Strong transcription	A549	lung
29	chr19:39432600-39440200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr19:39432800-39440200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr19:39432800-39440800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr19:39433400-39440600	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr19:39433600-39440200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr19:39433600-39440600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:39433800-39440200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr19:39434400-39440000	Strong transcription	Fetal Intestine Large	intestine
37	chr19:39435000-39440400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr19:39435600-39442800	Weak transcription	Fetal Kidney	kidney
39	chr19:39435800-39440600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr19:39435800-39453000	Weak transcription	K562	blood
41	chr19:39437200-39440200	Weak transcription	Brain Germinal Matrix	brain
42	chr19:39437200-39440400	Weak transcription	Spleen	Spleen
43	chr19:39437200-39440600	Weak transcription	NHLF	lung
44	chr19:39437200-39443000	Weak transcription	HSMM	muscle
45	chr19:39437400-39440200	Weak transcription	Pancreas	Pancrea
46	chr19:39437400-39440600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr19:39437600-39440200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr19:39437600-39440200	Weak transcription	Brain Angular Gyrus	brain
49	chr19:39437600-39440200	Weak transcription	Brain Anterior Caudate	brain
50	chr19:39437600-39440200	Weak transcription	Lung	lung

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