Variant report

Variant	rs10425064
Chromosome Location	chr19:35685773-35685774
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10403118	0.80[EUR][1000 genomes]
rs10416133	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12975276	0.81[EUR][1000 genomes]
rs34820491	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4805110	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs916694	0.83[JPT][hapmap]
rs9807816	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35684400-35685800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr19:35684800-35687800	Enhancers	Liver	Liver
3	chr19:35685000-35685800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
4	chr19:35685200-35685800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr19:35685200-35685800	Enhancers	HepG2	liver
6	chr19:35685200-35685800	Enhancers	K562	blood
7	chr19:35685200-35688600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:35685400-35685800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr19:35685400-35691800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr19:35685600-35685800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:35685600-35690000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr19:35685600-35693800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links