Variant report

Variant	rs10425263
Chromosome Location	chr19:41801297-41801298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10401902	0.92[AFR][1000 genomes]
rs10411097	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10414801	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10419107	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13344123	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13345076	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs60502595	0.84[AFR][1000 genomes]
rs8100690	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17637	chr19:41770228-41815282	Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41773000-41802400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr19:41773000-41804000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr19:41773200-41802200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr19:41773200-41814400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr19:41773400-41802200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr19:41773400-41802200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr19:41773600-41801400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr19:41773600-41801800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:41773600-41802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr19:41773600-41802200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr19:41773600-41802200	Strong transcription	Placenta	Placenta
12	chr19:41773600-41802200	Strong transcription	HSMM	muscle
13	chr19:41773600-41802800	Weak transcription	Right Atrium	heart
14	chr19:41773600-41803400	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr19:41773600-41804400	Strong transcription	Thymus	Thymus
16	chr19:41773600-41812600	Strong transcription	A549	lung
17	chr19:41773800-41801400	Strong transcription	HMEC	breast
18	chr19:41773800-41801600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr19:41773800-41801600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr19:41773800-41801600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr19:41773800-41802000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr19:41773800-41802200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr19:41773800-41802200	Strong transcription	Fetal Thymus	thymus
24	chr19:41773800-41802200	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr19:41773800-41802400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:41773800-41802600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr19:41773800-41802800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:41773800-41802800	Strong transcription	Fetal Stomach	stomach
29	chr19:41773800-41803200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr19:41773800-41803800	Strong transcription	Liver	Liver
31	chr19:41773800-41814200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr19:41773800-41814200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr19:41773800-41814200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr19:41774000-41801400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr19:41774000-41802000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:41774000-41802200	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr19:41774000-41802600	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr19:41774000-41812600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:41774000-41814200	Strong transcription	Fetal Brain Female	brain
40	chr19:41774200-41801600	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr19:41774200-41801600	Strong transcription	Fetal Muscle Leg	muscle
42	chr19:41774200-41801800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr19:41774200-41802200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr19:41774200-41802600	Strong transcription	Osteobl	bone
45	chr19:41774200-41803000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr19:41774400-41802000	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr19:41774400-41802800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr19:41774400-41807600	Strong transcription	Dnd41	blood
49	chr19:41776000-41801400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr19:41776400-41804000	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links