Variant report

Variant	rs10425755
Chromosome Location	chr19:53741335-53741336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF274	chr19:53739663-53741983	K562	blood:	n/a	n/a
2	ZNF274	chr19:53739762-53741340	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ENSG00000269288	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10402454	1.00[AFR][1000 genomes]
rs10408724	1.00[AFR][1000 genomes]
rs10408926	1.00[AFR][1000 genomes]
rs10410412	1.00[AFR][1000 genomes]
rs28475813	1.00[AFR][1000 genomes]
rs28577950	1.00[AFR][1000 genomes]
rs28687376	1.00[AFR][1000 genomes]
rs28710262	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065143	chr19:53507142-53853363	Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv544063	chr19:53507142-53853363	ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1058019	chr19:53507142-53904508	ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	nsv544064	chr19:53507142-53904508	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv912342	chr19:53581151-54010759	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv1063630	chr19:53591444-54419183	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	282 gene(s)	inside rSNPs	diseases
7	nsv1055378	chr19:53603268-53951855	Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
8	nsv544065	chr19:53603268-53951855	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
9	esv2830362	chr19:53681132-53933147	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
10	nsv1064604	chr19:53730688-53751243	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv580079	chr19:53732590-53756120	ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1055236	chr19:53739483-53778339	Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53728200-53748800	ZNF genes & repeats	Liver	Liver
2	chr19:53733600-53755200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:53733600-53755800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:53735800-53756200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr19:53736200-53749000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:53737400-53757600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr19:53737800-53743000	Weak transcription	Pancreas	Pancrea
8	chr19:53738000-53743000	Weak transcription	Fetal Stomach	stomach
9	chr19:53738600-53749000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr19:53738800-53756600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:53739000-53742000	ZNF genes & repeats	Psoas Muscle	Psoas
12	chr19:53739400-53743400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr19:53739400-53755200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:53739600-53748600	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr19:53739600-53748600	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr19:53739600-53756200	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:53740000-53747200	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr19:53740000-53749800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
19	chr19:53740000-53750600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr19:53740000-53756400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr19:53740000-53756600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr19:53740000-53756800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr19:53740200-53741800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
24	chr19:53740200-53741800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
25	chr19:53740200-53748800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr19:53740200-53748800	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr19:53740200-53749000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
28	chr19:53740200-53749000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr19:53740200-53749000	ZNF genes & repeats	Colon Smooth Muscle	Colon
30	chr19:53740200-53750600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr19:53740200-53752600	ZNF genes & repeats	Brain Hippocampus Middle	brain
32	chr19:53740200-53756800	ZNF genes & repeats	Fetal Lung	lung
33	chr19:53740200-53757600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr19:53740400-53741400	ZNF genes & repeats	Ovary	ovary
35	chr19:53740400-53741600	ZNF genes & repeats	Fetal Heart	heart
36	chr19:53740400-53741800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr19:53740400-53741800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
38	chr19:53740400-53741800	ZNF genes & repeats	HSMMtube	muscle
39	chr19:53740400-53742000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr19:53740400-53742200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr19:53740400-53742200	Strong transcription	Fetal Brain Male	brain
42	chr19:53740400-53743400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
43	chr19:53740400-53743400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
44	chr19:53740400-53745000	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
45	chr19:53740400-53747400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:53740400-53747800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
47	chr19:53740400-53747800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
48	chr19:53740400-53748600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
49	chr19:53740400-53748800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr19:53740400-53749000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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