Variant report

Variant	rs10427382
Chromosome Location	chr2:167643490-167643491
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1605877	0.88[AMR][1000 genomes]
rs16852633	0.88[AMR][1000 genomes]
rs2655827	0.82[AMR][1000 genomes]
rs2655837	0.82[AMR][1000 genomes]
rs34518941	0.82[AMR][1000 genomes]
rs59533882	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020308	0.88[AMR][1000 genomes]
rs73020311	0.88[AMR][1000 genomes]
rs73020312	0.88[AMR][1000 genomes]
rs73970082	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529384	chr2:167143465-167958752	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875375	chr2:167515013-167703912	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:167638600-167643800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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